Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0016 |
Symbol | |
ID | 8366416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 17265 |
End bp | 18812 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644982434 |
Product | Exo-alpha-sialidase |
Protein accession | YP_003140143 |
Protein GI | 256818864 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4409] Neuraminidase (sialidase) |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACAAC TATTTACCAT TATTGCATTA TGTTTTCTTA GCTTTGGCTA TGCCCAAAAA GGAATGACTT TTACTCAAAC ACAAATGCCT TTGGCTACTG ATAAAGATAA TCTTATTACC TCATTTGTAC TACCTATAAA GCAAGGAACA GAGGTAAAAG AACTTTCTTT GCAGTTTAAG AGTAAAAAGC TCAATCTTTC AGAACTCTCT GTTTATGTAG GTGCTAACGC TAAAAGAGAA CAAGCAACAC TTTTTGCTAA AACTTCAAAT CTTGGTTGCA ACACCAAACT ACAAGGAAAT TTCAAAGCTA CTAATGATAC CCTTTTTGTT TGGATTTCTG CTCGTACTAC TCAAAAACCA GACCTCTTGC AAAAACTGTA CTTATCAAAG GTAAAACTCA TCACTAATGA GGCAAAAATC ACCCTCAGCA ATGCTAAAAA AGAAGGACAA CGTTTTGCTA TTGCGCTTCG TCAGCGTAAA CAAGACGGGA TAGAATGTTA CCGTATACCA GGGCTTGTAA CCACTAATAA GGGTACGCTG ATAGCCGTTT ACGACAATCG TTACAACAAC TGCAAGGATT TGCAAGAAGA TATCGATGTA GGAATGAGTC GCAGTACTGA TGGCGGACAA ACGTGGGAAC CTATGAAAAA AGTGATTGAT ATGGGGGAAT GGGGAGGAAA AACTAACCGC CTTAATGGGG TAGGAGATCC TGCAGTTTTG GTAGACGAGC AAACCAATAC TATTTGGGTG ATGGGCTTGT GGCAGCACGG CTTAGATCCT CAAACAATGA GTTGGTGGGG CTCTAAAAGT GGAATGACTC CTGAGGAAAC AGGACAAATA GTAGTAGTAA AAAGTGAAGA TGATGGTAAA ACGTGGAGTG AACCTATCAA TATCACCTCT CAAATCAAAA ATCCCGAATG GAGGCTCTTT TTCCAAGGAC CTGGAAGAGG TATCTCTATG AGCAATGGTA CTTTGGTATT TGCAGGTCAG TTTAAAGATA AAGATCAAGT GCCTCATTCA ACTATTATTT ACAGTAAAGA CCACGGAAAA ACGTGGCACG TAGGTACAGG AGCTAAAACA CACACAACTG AATCTCAAGT GGTAGAACTC TCTGATGGTA CGTTAATGCT CAATATGCGC GACGACCGCA ATCGATCTAA TTATGAGCTT TCTGATAACT ATCACGGGCG TTCAGTAGCT GTTACTGCCG ATATGGGCAA AACGTGGGTA GAGCACAATA CCTCTCGCAC TGCTCTTACC GAACCTAATT GTATGGCAAG CATTATTTCT TATAAAGATA AAAAGGGAAA ACAGTATTTA TTCTTCTCTA ATCCTAATGA TGCAAAGGAT AGAGTAAATA TGACTATCAA AACAAGTAAA GACGAAGGTA ATACTTGGGA TAAACTTGCT TCAGTATTGT TGTATGAGCA AGCAGCTATG GGCTATTCTT GTCTTACAGT AATAGATAAT AAATATATAG GTATTCTTTA CGAAGGTGAT GGAGATTTAT ACTTCCAAAA AGTGCCTATC AAAGAGTTTA TCAAGTAA
|
Protein sequence | MKQLFTIIAL CFLSFGYAQK GMTFTQTQMP LATDKDNLIT SFVLPIKQGT EVKELSLQFK SKKLNLSELS VYVGANAKRE QATLFAKTSN LGCNTKLQGN FKATNDTLFV WISARTTQKP DLLQKLYLSK VKLITNEAKI TLSNAKKEGQ RFAIALRQRK QDGIECYRIP GLVTTNKGTL IAVYDNRYNN CKDLQEDIDV GMSRSTDGGQ TWEPMKKVID MGEWGGKTNR LNGVGDPAVL VDEQTNTIWV MGLWQHGLDP QTMSWWGSKS GMTPEETGQI VVVKSEDDGK TWSEPINITS QIKNPEWRLF FQGPGRGISM SNGTLVFAGQ FKDKDQVPHS TIIYSKDHGK TWHVGTGAKT HTTESQVVEL SDGTLMLNMR DDRNRSNYEL SDNYHGRSVA VTADMGKTWV EHNTSRTALT EPNCMASIIS YKDKKGKQYL FFSNPNDAKD RVNMTIKTSK DEGNTWDKLA SVLLYEQAAM GYSCLTVIDN KYIGILYEGD GDLYFQKVPI KEFIK
|
| |