| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_4418 |
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| Symbol | rpsD |
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| ID | 8393770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 8802 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013161 |
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| Strand | - |
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| Start bp | 4566647 |
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| End bp | 4567255 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644982327 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003140038 |
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| Protein GI | 257062150 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000122066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.206155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTCGTT ATAGAGGACC ACGTCTGAGA GTTGTTCGAC GACTGGGGGA ACTCCCTGGA
TTAAGTCGGA AAAACCCCCG TCGCGCTTAT CCCCCTGGAC AACATGGACA AGCGCGTAAA
AAGCGTTCAG AATACGCTAT CCGACTCGAA GAAAAGCAAA AACTTCGCTT TAACTATGGG
GTAACAGAAG GGCAGTTAAT TCGATACGTC AAGAAGGCAC GGAGAGCCAC GGGTTCTACG
GGTCAGAAAC TCCTAGAATT GCTAGAAATG CGCCTGGATA ATACGGTTTT TCGCCTAGGA
ATGGCTGGAA CTATTCCCGC AGCGCGTCAA TTAGTGAATC ACGGTCATAT CACTGTTAAT
GGTAAAGTAG TGGATATTCC CAGTTATCAG TGCCGTCCTG GGGAAGTGAT CGCAGTTCGC
AATCAAGAGC GTTCTCGTCG TTTGGTAGAA GCGAATATGC AATATCCAGG GTTAGCTAAC
CTACCGAGTC ATTTGGAGTT TGACAAAAAT ACCCTAACCG GTAAAGTTAA CGCGGTGATT
GAACGGGAAT GGATTGCTTT GCAAATTAAT GAATTGTTGG TCGTTGAATA TTATTCTCGG
AAAGCGTAG
|
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| Protein sequence | MSRYRGPRLR VVRRLGELPG LSRKNPRRAY PPGQHGQARK KRSEYAIRLE EKQKLRFNYG
VTEGQLIRYV KKARRATGST GQKLLELLEM RLDNTVFRLG MAGTIPAARQ LVNHGHITVN
GKVVDIPSYQ CRPGEVIAVR NQERSRRLVE ANMQYPGLAN LPSHLEFDKN TLTGKVNAVI
EREWIALQIN ELLVVEYYSR KA
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