| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_4414 |
|---|
| Symbol | |
|---|
| ID | 8393766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | + |
|---|
| Start bp | 4559026 |
|---|
| End bp | 4562526 |
|---|
| Gene Length | 3501 bp |
|---|
| Protein Length | 1166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644982323 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003140034 |
|---|
| Protein GI | 257062146 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.107711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT CATTTAACTT ATTTATTGAA TTACCCTTCT ATGATAAGGG ATTAAGCCAA
AACACTTCTG TTGAACAAGT CATCATCGTC GTAACCAGCT TGATGATCGT TTTTCTCATG
GGAGTTATGC TGTGGCAGTG GTATTCTTTA AAACAGTTAA ATAATCAACT CAAAAACGAA
ATTATAACAC TTCAGCAAGA CCAAAAATTT TTGTTAGAAG AAAAGCGAGA AGAATTACAA
ACCATTTTAG AAATTTTGCC CGATTTATTT TTCCGTATGA ACTCAGATAG CACCATCTTA
GACTATAGGG GAGAGTCAAA ATCTGAGTTA TATGTCTCAC CAGAACTGTT TCTCGGAAAA
CCCATGATAG AGATTTTACC TGAACCCGTT GCTCAAGCGT GGAGAGACGC GATCGCTCAG
ATATTAGGCT CCAATACTCT AGTCACTCTA GAATATCAGT TATCAACATC TAACGCAGAG
CAATATTACG AAGCGCGGTT AGTCCCTTTT GCTCATCAGC AAATTATCGC TATTGTTCGC
AATATTAGTC AGCAAAAACA AACGGAAATT AACCTCAAAA AATCACAAGA TTTTTTACAA
ACTATTATTA ATTATTTACC CGTTGCCCTT TTTGTTAAAG ATGGAAAACC AGAAAAATTC
GGTCAATTAT TATTAGTCAA TAAAGCTTGT GAAGAGATGA TGGGATTAGT TTCCTCTCAA
GTTGTTGGAA AAACAGGTCA TGATTTATTT CCCGCAGATC AGGCAAACTT TTATGAGCAA
AAAGATCGAG AAGCTTTTGC AAATGGAGTT CCTGAAGATA TTCCAGAAGA ACCCATTGAT
AGCTATAATG CAGGTAAAAA AATTCTCCAT ACCATTAAAG TTCCTCTGTA TGATCAAAAT
AATGATCCCG AATATTTAGT CTGTATTTCT GAAGATATTA CTCGACAAAA AAAAGCAGAA
ATTGATCTTG AAAAAAGTCA TAATATTTTG CGAACGATTA GCTTAGCGCA GTCTCAATTT
ATTGCTGATA CCGTTCCTCA GATTTTATTT AATGACTTAT TAGAAAATCT TTTAAACTTA
ACAGATAGTG AATATGGCTT CATTGGAGAA ATTCTTTACT CAGCACAAGG GAAACCTTAC
ATTGAAGAAG CACACATGAA GACACGGGGG CAACCTTACC TCAAAACCCA CGCAATAACC
AATATTGCCT GGAATGAAGA AACCAGGCAA TTTTATGCAG AAAATTCACC TCATGGCATG
GAATTTTATA ATTTAAAGAC CCTATTTGGG GCAGTGATTA CCACCGGTCA ACCCGTAATT
GCCAATCATC CAGCGACTGA TCCCAGACGC GGGGGTTTAC CCGAAGGACA CCCTAGTCTT
GACACTTTCT TGGGACTGCC ATTTTACCAC GATAACCAGT TAGTAGGAAT GGTGGGGATT
GCCAACCGCG AGCAAGGTTA CGATATTGAG TTAGTGGAGT ATCTGCAACC GTTTTTGACC
ACTTGCGCTA ACCTGATTAA AGCCTACCGC AATGAGCGAA GTCGTCAACA AGCAGAAAAA
GAACGAGAAG TCAGCGAAAA TAAGCTAAAA GCCCTCTTAA AATATTCCTC GGATATTGTT
TCCGTTTTCG ATGAACAAGG GCAGTTAATT TATACCTCTC CTGCGGTTGA GAAAATCTAT
GGCTTTTCTC CTGAAGAACT GCAAAATAAA AATACCTTTG AGTTAATTCA CCCCGATGAT
CGTTCAGAAG TCAGAAACGC TTTTTGTCAG CTATTAGAAG ACCCTAAAAA TACGATTAGG
GTTCACTATC GCTATCAAAC CAAAAATCAA CGATTTATTT GGATAGAAAC GGTTGCCAGC
AATCAATTGC AAAATCCTAA TATACAAGGC ATTGTGGTCA ACTCTAGGGA TATTAGCCAT
CGCAAAGAAT CAGAAGAAGC CTTACGGGTC AGTGAGGAAC GATTTCGCCA ATTAGCCGAA
AATATCCGCG AAGTTTTTTG GATGATTGAT GTTTCTACCG TCAATCCCAC CGAACAAAGA
ACCCTTTATG TTAGTCCCGC TTATCAACAG GTTTGGGGAC ATAAACCAGA GGAACTATAC
GAAAATCCAC GTCAATGGAT ACAAGCTGTT CATCCTGATG ATTTTGAACG AATTAGTCAT
GAATTTTTTG ATAAATTGCT GATCACTGGC TTTGATCATG AATATCGGAT TATTCGACCC
GATGGAACTA TCCGTTGGAT TCGTGATCGC GGGTTTCCCA TCAAAAATCA AGTGGGCGAA
TTTTGTCGGG TGACGGGTTT AGCTGAAGAT ATTACAAAAC AAAAACAAAC CGAGGAGGAG
ATTAGAGGAT TAAATGCAGC TTTAGCTGAG CAAAATCGTC AATTAGAACA ACGAGTAGCG
CAACGCACCG CAGAATTGGA AATGTTGTTG AATACATTGC CAGATTTTGT CTTTGTGGTG
GAACGGGACA CCATGAAACT CTCGTTTTGT AATCAAATGT TTGCTCAGGG GATTGGGTTT
ACTAATCGTT CTGAGGTCGA AGGAAAAACA ATTTTTGAGT GTTTTCCTAC TGAAATGGCT
AACTATTTTG CTCAACAAAA TGAACAAGTT TTTAACTCAG GAGAAATCCT CCATGTTGAA
GAGAAGGTTT GCTTACCGAA CGGCGATCGC TATTTTGATA CCTATAAAGT TCCCCTCAGA
ACCCCCCAAG GGGAAATTTA CGCGCTTTTG GGAACGGGAC GAGATATGAC GGAATTAGTC
AACACTAAAA AAGTGTTAAT GCAACGCACC ACGCAATTAG AATTAGCTAA TCAAGAATTG
GATTCTTTTT GTTATTCGGT GTCCCATGAT TTACGAGCAC CTTTGCGACA TATTCATGGT
TTTGTCAATG CTTTGAAACA ACAATTGATG ACTAATAATA CCTTTGAAGA TCCTAAAGTT
CTTCATTATC TAGACGTGAT CGAAAATAGT AGTCAAAAAA TGGCTCATTT AATTGATGGG
TTACTGACTT TATCGCGGGT AGGAAGACGT GAATTAGTAT TACATACGGT GGATCTTAAT
GCTGTTGTGA AAACGGCGAT TAATTTACTA TCTCCTTTAG AGAATAAAAC CCATACGATT
AAATTTGAAG TAGGGAAATT ACCCACCGTT CAAGGGGATA ATGCTCTATT ACAACAAGTC
TTTACTAATT TATTAGACAA TGCCCTTAAA TTTAGCCGCG ATCGCAATCC TATTAGCATT
AAAATTAATA CCTTGGAAGA TGGAACGATT TTTGTTTCTG ATAATGGGGT GGGTTTTGAT
ATGGAATACG CTGATCAACT ATTTGGGGCA TTTCAACGCT TGCATTCCCA AGCAACCTTC
CCAGGAACCG GGATCGGGTT ATCGATTGTT CAGCGCATTA TTCACCGTCA TGGTGGCCAT
ATTTGGGCAG AAAGTCAGGT AGACAAGGGA ACCACTTTTT ATTTTACTTT ACCCCTTAAA
AGCGATAAGG TTGACTCATA A
|
|---|
| Protein sequence | MKNSFNLFIE LPFYDKGLSQ NTSVEQVIIV VTSLMIVFLM GVMLWQWYSL KQLNNQLKNE
IITLQQDQKF LLEEKREELQ TILEILPDLF FRMNSDSTIL DYRGESKSEL YVSPELFLGK
PMIEILPEPV AQAWRDAIAQ ILGSNTLVTL EYQLSTSNAE QYYEARLVPF AHQQIIAIVR
NISQQKQTEI NLKKSQDFLQ TIINYLPVAL FVKDGKPEKF GQLLLVNKAC EEMMGLVSSQ
VVGKTGHDLF PADQANFYEQ KDREAFANGV PEDIPEEPID SYNAGKKILH TIKVPLYDQN
NDPEYLVCIS EDITRQKKAE IDLEKSHNIL RTISLAQSQF IADTVPQILF NDLLENLLNL
TDSEYGFIGE ILYSAQGKPY IEEAHMKTRG QPYLKTHAIT NIAWNEETRQ FYAENSPHGM
EFYNLKTLFG AVITTGQPVI ANHPATDPRR GGLPEGHPSL DTFLGLPFYH DNQLVGMVGI
ANREQGYDIE LVEYLQPFLT TCANLIKAYR NERSRQQAEK EREVSENKLK ALLKYSSDIV
SVFDEQGQLI YTSPAVEKIY GFSPEELQNK NTFELIHPDD RSEVRNAFCQ LLEDPKNTIR
VHYRYQTKNQ RFIWIETVAS NQLQNPNIQG IVVNSRDISH RKESEEALRV SEERFRQLAE
NIREVFWMID VSTVNPTEQR TLYVSPAYQQ VWGHKPEELY ENPRQWIQAV HPDDFERISH
EFFDKLLITG FDHEYRIIRP DGTIRWIRDR GFPIKNQVGE FCRVTGLAED ITKQKQTEEE
IRGLNAALAE QNRQLEQRVA QRTAELEMLL NTLPDFVFVV ERDTMKLSFC NQMFAQGIGF
TNRSEVEGKT IFECFPTEMA NYFAQQNEQV FNSGEILHVE EKVCLPNGDR YFDTYKVPLR
TPQGEIYALL GTGRDMTELV NTKKVLMQRT TQLELANQEL DSFCYSVSHD LRAPLRHIHG
FVNALKQQLM TNNTFEDPKV LHYLDVIENS SQKMAHLIDG LLTLSRVGRR ELVLHTVDLN
AVVKTAINLL SPLENKTHTI KFEVGKLPTV QGDNALLQQV FTNLLDNALK FSRDRNPISI
KINTLEDGTI FVSDNGVGFD MEYADQLFGA FQRLHSQATF PGTGIGLSIV QRIIHRHGGH
IWAESQVDKG TTFYFTLPLK SDKVDS
|
|---|
| |