| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_4373 |
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| Symbol | |
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| ID | 8393725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 8802 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013161 |
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| Strand | - |
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| Start bp | 4521795 |
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| End bp | 4525271 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644982283 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003139994 |
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| Protein GI | 257062106 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.456695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000184147 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCTTT CTTCTCTAAT TCGCAATCTC CAAAAATCTC CCCTAACAAA AGAACTATTA
GAAAAATTAA ATAAAACAGG TTCGTTAGGA TTAAAGGGTG TTCCTCGACT CCCGAAAGGG
CTAGTATCTT CAGCTTTAGC GCAATCTCTA GATAACAATT TATTGGTGAT TTGTGCCACT
CTTGAAGAAG CGGGAAGATG GGCAGCCCAA TTAGAGATGA TGGGATGGAA AAGTGTTAAT
TTTTATCCTA CCTCAGAAGC GTCTCCCTAC GAAGCATTTA ACCCAGAATC AGAGATGATT
TGGGGACAAA TGCAAGTCCT ATCTATTCTC AATTCTCAAC AGAATGGGTT AGCGATTGTT
ACCACAGAAA AAGCCTTACA ACCCCATTTA CCTCCCTCGA CTGTTTTTGA AACGTACTGT
TTTAATTTAC AAATAGGAAT CACTAAAACG TCCCAAGAAA TTGATGAAAC ATTAGTCAGG
TTAGGCTATG AAAGGGTTGC TTTGGTGGAA ACTGAAGGAC AGTGGAGTAG ACGAGGAGAT
ATTGTCGATA TTTTTCCTGT TTCTTCAGAG TTACCTATTC GCTTAGAATG GTTCGGAGAT
GAATTAGAAA AAATTCGAGA ATTAGATCCT GCAACACAGC GTTCTTTAGA TAAACTTGAG
CAAGTTATTT TAACTCCTAC CAGTTTTAAT CCGATTATTG CTAATACGCT TAAAAACAAA
AATATTAACT TACAAAATTA TTTATCAGAT GAAGAAAAAG AAGGATTAGA TAATGCTAAT
TTCCCCGAAG GAATGGCAAG GTTATTAGGA ATTGCCTTTG AACAACCTGC TTCATTATTA
GATTATTTAC GCGAGAATAC CCTATGTGTT TTTGATGAAG TCGAACAGTG TCAATCCCAT
AGCGATCGCT GGTTAGACTA TGTAGAAGAT AATTGGCAAG AATTAGATCC TCCTTTACCT
AAAATTCATC GTCCGTTTAG CGAGTCATTA GAATTAGCTA AAAAGTTTCC GATTTTATAC
CTATCTGAAC TATCAGAAGT AACCGATAAG AATGCCTTAG ATTTATCGAG TCGTCCTATT
CCTACCACTC CTCATCAATT CGCTAAAATC GCTGAAATCT TACGAGGAAA ACGAGAAATT
TATAGCGGTA TTACCTTAAA TAAATATTCA ACTTGGTTAA TTTCCGCCCA ACCCACTCGA
ACTGTTTCTT TGTTAGAAGA ACATGACTGT CCCGCGCAAT TTATTCCTAA CAAAAAAGAC
TATCCAGGGA TTGAAAAATG CCATATTCAA GGGACAGCCG TTGCTTTAAA ATATTCAGGA
GTAGCTGAAT TAGAAGGGTT TATTTTACCA ACTTTCCGCA TTGTTGTTAT CACCGATAGA
GAGTTTTTTG GACAGCACGT TTTAGCCCCT TCTGGGTATA TTCGCAAACG ACGACGCGCT
GCTTCTAAAC AAGTTGATTT AAACCAACTT AATCCAGGAG ATTATGTTAT TCATAAAAAC
CATGGACTTG GTAAATTTTT AAAACTCGAG AGTTTAGCAA CTCGTGAGTA TTTAGTCATT
CAATATGAAG ATGGATTATT AAGGGTTCCA GCCGATTCTT TTGATAGTTT ATCCCGCTAT
CGACACACAG GAAGTCACCC CCCCGAACTG CATAAAATGA CGGGTAAAAT TTGGGAAAAA
ACAAAACAAA GAGTCCGTAA AAGCATCAAA AAACTAGCCG TTGATTTGCT AAATTTGTAT
GCTAAACGAG CCAAAAAAGA AGGCTTTATT TATCCTCCTG ATACCCCTTG GCAAGAGGAA
TTAGAAGACT CTTTTCCCTA TCAACCCACT CCCGATCAAT TAAAAGCGGT TCAAGATGTA
AAAATGGACT TAGAAAGCGA TCGCCCCATG GATCGATTAG TGTGTGGGGA TGTCGGGTTT
GGCAAAACAG AAGTTGCTGT GAGGGCTATT TTTAAAGCCG TTACCAGTGG ACATAAACAA
GTCGCTTTAC TTGCCCCGAC AACCATTTTA ACCCAACAAC ATTATCATAC CCTGAAAGAA
CGATTTGCCC CCTATCCAAT TAATATTGGC TTATTAAATC GCTTTAGGAC AACCTCAGAA
AAAAAAGATA TTGTTCAACG CTTAGCAACG GGAGAATTAG ACATTGTTGT AGGAACCCAT
CAACTCTTAG GACAAAGTGT GAAATTTAAA AATTTAGGCT TATTAGTTAT CGATGAAGAA
CAACGATTTG GGGTTAACCA AAAAGAGAAA ATAAAAGCCC TAAAAACAGA AGTTGATGTC
CTTACTTTAA CTGCAACTCC CATTCCTCGA ACCCTCTATA TGTCGCTTTC TGGTATTCGA
GAAATTAGCT TAATTACTAC CCCTCCCCCA TCCCGTCGTC CCATCAAAAC CCACCTTTCG
AGTTATAATC CTGACGTAGT GAGAACCGCT ATTCGTAACG AATTAGATCG GGGAGGACAG
ATATTTTATG TTGTTCCCAG AGTTGAAGGA ATTGAAGAAG TCGCCGGACA AATTCAACAA
ATGGTTCCCA GTGCTAGAAT TGTGATTGCC CATGGTCAAA TGGATGTTAA TGACCTAGAA
ATGACCATGC TAGGTTTTAA TAATGGCGAA GCTGATATCC TCGTTTGTAC TACGATTATT
GAATCAGGAT TAGACATTCC TAGAGTTAAT ACTATTATCG TCGAAGATGC CCAAAAATTT
GGCTTATCCC AACTGTATCA ATTAAGAGGA AGAGTGGGGC GATCGGGGAT ACAAGCTCAT
GCTTGGTTAT TATATCCCAA CAAAGGACAA CTAAGCGAAA CGGCAAGGCA AAGATTGAGG
GCATTACAAG AATTTAGTCA ACTCGGTTCA GGGTATCAAT TAGCTACCCG TGACATGGAA
ATTCGGGGAG TTGGTAACTT ATTGGGGGCT GAACAATCAG GACAAATGAT GGCCATTGGT
TTTGAATTGT ATATGGAAAT GTTGCAAGAA GCCATCAAAG AAATTCAAGG GCAAGAAATT
CCTAAAGTTG ATGAAATCCA AATAGATTTA CAGCTAACTG CCTTTATTCC GTCCGATTAT
ATTCCAGATT TACAACAAAA AATGGATGCT TATCGAAGAA TTGCCATGGC TAATTCTAAA
GAGCAATTAG AGGAAATTGT TAAAGATTGG ACTGATAGAT ACGGAACGAT TCCTTCCCCT
GTTAGACAAC TTTTACAAGT GATAGAGTTG AAACAAATTG GTAAATCTTT AGGCTTTTCT
CGCATTAAAG TCGAAGGAAA ACAAAACGTT GTTTTAGAAA CCCCAATGGA AGAACCTGCT
TGGAAATTAT TACAAGAAAA TTTACCCAAT CATCTGCGAT CGCGTTTTGT TTATAGTCCC
AAAAAAGTGA CCGTTAGGGG ATTAGGAATT GTTAAACCTC AGCAACAATT AGAAAACTTA
ATTGAGTGGT TAGGTAAAAT GAAAGGGGCT CTACCGGAGG GGAAAATAGA GGACTGA
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| Protein sequence | MTLSSLIRNL QKSPLTKELL EKLNKTGSLG LKGVPRLPKG LVSSALAQSL DNNLLVICAT
LEEAGRWAAQ LEMMGWKSVN FYPTSEASPY EAFNPESEMI WGQMQVLSIL NSQQNGLAIV
TTEKALQPHL PPSTVFETYC FNLQIGITKT SQEIDETLVR LGYERVALVE TEGQWSRRGD
IVDIFPVSSE LPIRLEWFGD ELEKIRELDP ATQRSLDKLE QVILTPTSFN PIIANTLKNK
NINLQNYLSD EEKEGLDNAN FPEGMARLLG IAFEQPASLL DYLRENTLCV FDEVEQCQSH
SDRWLDYVED NWQELDPPLP KIHRPFSESL ELAKKFPILY LSELSEVTDK NALDLSSRPI
PTTPHQFAKI AEILRGKREI YSGITLNKYS TWLISAQPTR TVSLLEEHDC PAQFIPNKKD
YPGIEKCHIQ GTAVALKYSG VAELEGFILP TFRIVVITDR EFFGQHVLAP SGYIRKRRRA
ASKQVDLNQL NPGDYVIHKN HGLGKFLKLE SLATREYLVI QYEDGLLRVP ADSFDSLSRY
RHTGSHPPEL HKMTGKIWEK TKQRVRKSIK KLAVDLLNLY AKRAKKEGFI YPPDTPWQEE
LEDSFPYQPT PDQLKAVQDV KMDLESDRPM DRLVCGDVGF GKTEVAVRAI FKAVTSGHKQ
VALLAPTTIL TQQHYHTLKE RFAPYPINIG LLNRFRTTSE KKDIVQRLAT GELDIVVGTH
QLLGQSVKFK NLGLLVIDEE QRFGVNQKEK IKALKTEVDV LTLTATPIPR TLYMSLSGIR
EISLITTPPP SRRPIKTHLS SYNPDVVRTA IRNELDRGGQ IFYVVPRVEG IEEVAGQIQQ
MVPSARIVIA HGQMDVNDLE MTMLGFNNGE ADILVCTTII ESGLDIPRVN TIIVEDAQKF
GLSQLYQLRG RVGRSGIQAH AWLLYPNKGQ LSETARQRLR ALQEFSQLGS GYQLATRDME
IRGVGNLLGA EQSGQMMAIG FELYMEMLQE AIKEIQGQEI PKVDEIQIDL QLTAFIPSDY
IPDLQQKMDA YRRIAMANSK EQLEEIVKDW TDRYGTIPSP VRQLLQVIEL KQIGKSLGFS
RIKVEGKQNV VLETPMEEPA WKLLQENLPN HLRSRFVYSP KKVTVRGLGI VKPQQQLENL
IEWLGKMKGA LPEGKIED
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