| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_3960 |
|---|
| Symbol | |
|---|
| ID | 8393310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 4076989 |
|---|
| End bp | 4077693 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644981884 |
|---|
| Product | orotidine 5'-phosphate decarboxylase |
|---|
| Protein accession | YP_003139598 |
|---|
| Protein GI | 257061710 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00328038 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000886746 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAT CTGATCGCAT TATTGTTCCC TTAGATGTCC CCACGCTCAA TGAGGCGATC
GCCTTGTTAG ATCAACTCCC TGAAGTCAGT TTTTGGAAGG TGGGGTTAGA GTTATTTGTT
GCCACAGGGT CAGATATCCT TAAAATCCTG AAAGAAAGGC AAAAACGCAT CTTTCTTGAC
CTTAAATTCC ATGATATCCC CAATACTGTT GCCGGAGCTT GTCGTAGTGC CAGTCAATAT
CAAGTAAACT TTCTCACGCT TCATGCTACC GCCGGACGCA ATGCCCTGCA AGCAGCCGCA
CAAGCCATGA GTCAAACCCC TTCCCCTCCC CAATTACTGG CTATTACGCT GTTAACCAGT
TTAAACTCAC GGGAATTAGC ATTTGATTTA AAAATCCCCT TAGAATTACC AGAATATGCG
CTACAAATGG CACTTTTAGC CCAAGAATCA GGCATGAATG GAGTAGTCTG TTCCCCTCAA
GAAGTCCGTC AATTGCGTCA CGTCTGTGGG GATAAGTTTC TCTTGGTTTG TCCAGGGGTG
CGTCCTAATT GGTCTAAAAT AGGAGATCAG CGACGGGTAA TGACCCCTGT TGAAGCCATA
CAAGCAGGTG CAGACTATCT AGTCATTGGT CGTCCCATTA CCATGGCAGA TGATCCCGTT
GCAGCTTGGG ACAAAATTTG CCAAGAATTA GACGAAGTAT GCTGA
|
|---|
| Protein sequence | MSLSDRIIVP LDVPTLNEAI ALLDQLPEVS FWKVGLELFV ATGSDILKIL KERQKRIFLD
LKFHDIPNTV AGACRSASQY QVNFLTLHAT AGRNALQAAA QAMSQTPSPP QLLAITLLTS
LNSRELAFDL KIPLELPEYA LQMALLAQES GMNGVVCSPQ EVRQLRHVCG DKFLLVCPGV
RPNWSKIGDQ RRVMTPVEAI QAGADYLVIG RPITMADDPV AAWDKICQEL DEVC
|
|---|
| |