| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_3324 |
|---|
| Symbol | |
|---|
| ID | 8392660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 3393081 |
|---|
| End bp | 3394418 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644981266 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_003138992 |
|---|
| Protein GI | 257061104 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.416705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCC ACAATCATCG AAATTCAACT ATCATGACTC AATCTCCTCA TCTTCCCATA
CCCCCCTTAC CTCTTCCTCC CATGCCTTCA AGGGCTTCCT TCGATGAGCC AGAAGATGAT
AATTTTTCTG AAGGAACCCA ATTTCTCCCT CTCCCTGAAC CCCCAACCCT AGAAGATAGT
CCAGCAGTCG CCTTAAATAA ACCGCCCCTT CCCGTACCAC CCCCATTGCC AAAAGCTCCT
CCAATGCCAC CTCCAAGAGC CTTTGGCCGT TCCCCAGGAC AACCGAGCTT AGCCCAATTA
GTCCGTCAAG CCTTTGATGA GGGGTTCTCC GATGTACACT TAGGCGTAGG AGAAGTACCC
AGAATGCGCG ATCGCGGCGA AATGCTCCCC CTAGAGTATC CAGAAACCGA CGAAAACACC
TTTATGAGTT GGTTACGCGA AATTCTCAAA GAAGACGAAA TCCAACGCTT TAAAAAAGAA
CTCGAATTCG ATGGAGCAAC TCAATACGAA TTTGCCCGGG TTCGGATTAA CGTTTTTGAC
AGTCTTCGAG GTTCAGGCAT GGTACTGCGC TTAATTCCTC TGAAAATTTT AACCCTAGAA
GAACTTCGCC TACCCCCCGT CTTTAAGGAT ATCTCCGATG CCCACAAAGG ACTGGTCTTA
GTCACAGGTC CAACAGGATC AGGAAAATCA ACCACCTTGG CTGCAATGGT GGACTATATT
AATAAAGAAC ACCCCAAACA TATCATTACC ATTGAAGATC CCATTGAATT TGTCCACCAA
AGTCGCCGTT GTTTGATTAA GCAACGAGAA GTAGGCATCA ATACCTTAAA ATTTGATAAT
GCCTTAAAAG CTGCCCTACG GGAAGATCCA GACATCATTC TAGTGGGGGA AATGCGGGAC
AAAGAAACCG TCAATACTGC CCTCAAAGCA GCCCAAACCG GTCACTTAGT CATGGGAACC
CTTCATACCA ACAGTGCCGT GAAAACCCTA GAACGGATTC TCGGTTTATA CAATGCAGAA
GAACGGGAAG CCATGCGAGT GGCGATCGCG GAATCCCTAG TAGCGGTTAT TGCTCAAGGG
TTATGTCGTA CCACCGATGG CAAACGGGCG GCCTATCACG ATATTCTCGT TAACACTGAA
ACCGTGAAAG ACTATATTAT CCAAGGTAAA AATGATGAAA TCCTAGAATT GATGAAGGAT
GGAGAGTATG ATGGCATGAT TACGACCAAT CAATCGCTGT TTAACCTCTA TCAAGAAGGA
CGGATTACTG AAGAAGTTGC CCTCGAAAGA GCACCTATTC CTAATGAAAT GGCGATGATG
TTACGCGGTA GAATTTAA
|
|---|
| Protein sequence | MNSHNHRNST IMTQSPHLPI PPLPLPPMPS RASFDEPEDD NFSEGTQFLP LPEPPTLEDS
PAVALNKPPL PVPPPLPKAP PMPPPRAFGR SPGQPSLAQL VRQAFDEGFS DVHLGVGEVP
RMRDRGEMLP LEYPETDENT FMSWLREILK EDEIQRFKKE LEFDGATQYE FARVRINVFD
SLRGSGMVLR LIPLKILTLE ELRLPPVFKD ISDAHKGLVL VTGPTGSGKS TTLAAMVDYI
NKEHPKHIIT IEDPIEFVHQ SRRCLIKQRE VGINTLKFDN ALKAALREDP DIILVGEMRD
KETVNTALKA AQTGHLVMGT LHTNSAVKTL ERILGLYNAE EREAMRVAIA ESLVAVIAQG
LCRTTDGKRA AYHDILVNTE TVKDYIIQGK NDEILELMKD GEYDGMITTN QSLFNLYQEG
RITEEVALER APIPNEMAMM LRGRI
|
|---|
| |