| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_2471 |
|---|
| Symbol | |
|---|
| ID | 8391796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 2492829 |
|---|
| End bp | 2494049 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644980438 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003138175 |
|---|
| Protein GI | 257060287 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0400427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.45906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGG GGTTCGAGTT TGATGTGTTT CTAGCGCATA ATAGTGTGGA TAAACCCCAT
GTTAGGGAGA TTAGTAACAA ACTAAGGGAA CGAGGGTTAA AACCTTGGCT AGATGAGGAA
CAAATCCCTC CTGGGATGTC ATTTCAGGAT GAAATTCAAA AAGCGATTCC CCTGATTAAA
TCGGCAGCTA TTATTATTGG TACTCAGGGA TTAGGAAAAT GGCAGATCAT GGAACTGCGA
TCGCTTATCA CTAAATTTGT GAATCTAAAA ATTCCTGTTA TTCCTGTTTT GTTGCCAGGG
GTTAATAATA TTCCAGGTGA TTTACTATTC CTACAAGAAC TTAATTGGGT TAAGTTTGAA
CAGATTGATG ATGCTACGGC TTTTTATCGG CTAGAGTGGG GCATTACTCA GGTTAAGCCG
GAGTTACATC CCAAAACTGT ACAATTGACT GCCGAGGAAT GGTTTAACCT TGGCTATAAC
AAGGGTGAAT CAGGAGACAA CCAAGGTGCG ATCGCTGACT TTAATCAAGC CATTAAAATC
AAATCCGACT TGGCAGAAGC GTACTACAAT CGCGGGTTAG CCAAGTCTAA CTTAGGAGAC
TATCAAGGTG CGATCTCTGA CTACAATCAA GCCATTGAAA TCAAACCCGA CTATGCTGCT
GCCTACAACA ATCGTGGATT AACTAAGTAT AACTTAGGAG ACAACCAAGG TGCGATCACA
GACTACACTC AAGCGATTGA AATCAAACCC GACGATGCTG ATGCCTACTA TAATCGCGGG
TTAGCCAAGT ATAACTTAGG AGACAAGCAA GGGGCGATCG CTGACTACAA TCAAGCGATT
AAAATCAAAC CCGACTATGC TACTGCCTAC AACAATCGCG GGAATGCTAA GTATAACTTA
GGAGACAAGC AAGGGGCGAT CGCTGACTAC AATCAAGCGA TTAAAATCAA ACCCGACTAT
ACCCTTGCCT ACATCTGTTG CGGGTTAGCC AAGTCTAACT TAGGAGACAA CCAAGGTGCG
ATCACTGACT ACAATCAAGC GATTAAAATC AAACCCGACT ATGCTGATGC CTACATCTGT
CGCGGGAATG CCAAGAAAAA CTTAGGAGAC AACCAAGGTG CGATCGCTGA CTACAATCAA
GCAGCACAAC TTTACTCGCA GCAAAATAAT ATGGAATGGT ATCTTAAAGC CCTTGAAAAG
ATCAAAAAAC TTGAACAATG A
|
|---|
| Protein sequence | MSEGFEFDVF LAHNSVDKPH VREISNKLRE RGLKPWLDEE QIPPGMSFQD EIQKAIPLIK
SAAIIIGTQG LGKWQIMELR SLITKFVNLK IPVIPVLLPG VNNIPGDLLF LQELNWVKFE
QIDDATAFYR LEWGITQVKP ELHPKTVQLT AEEWFNLGYN KGESGDNQGA IADFNQAIKI
KSDLAEAYYN RGLAKSNLGD YQGAISDYNQ AIEIKPDYAA AYNNRGLTKY NLGDNQGAIT
DYTQAIEIKP DDADAYYNRG LAKYNLGDKQ GAIADYNQAI KIKPDYATAY NNRGNAKYNL
GDKQGAIADY NQAIKIKPDY TLAYICCGLA KSNLGDNQGA ITDYNQAIKI KPDYADAYIC
RGNAKKNLGD NQGAIADYNQ AAQLYSQQNN MEWYLKALEK IKKLEQ
|
|---|
| |