Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cyan8802_1545 |
Symbol | |
ID | 8390857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 8802 |
Kingdom | Bacteria |
Replicon accession | NC_013161 |
Strand | + |
Start bp | 1583993 |
End bp | 1586245 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644979542 |
Product | VacB and RNase II family 3'-5' exoribonuclease |
Protein accession | YP_003137292 |
Protein GI | 257059404 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.405162 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0471328 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTTT CAATCGCTAC ACTACTGTCC CATTTTACTG ATGATAAATT AGTTGCAGCT AAATTCCTAG AAAAAAAACT AGGCTGTGAA GATGAAGAAA ACATCGAAAA ACTGCAAATT GTTTTGGATG CCTTAGAAAG AATTGGGATT CTAGAAAAAG AAAGGGGCAA ATATCGTCGA GTTCCTGACA ATAACCTCAT TGAAGCCAAA CTGCGCTGTT CAAGTAAAGG CTTTTGCTTT GCTATCCAAG ATCAAGAAGA TGCCGATGAC ATTTACATCC GAGAAACTCA TTTGAGTAAC GCTTGGAACG GCGATCGCGT CTTAGTTGAG GTGATCAAAG AAGGAACCCG TCGTCGTTCT CCCGAAGGGG AAGTGAAAGT CATTTTAGAA CGGGCTAACC CTTCCTTGCT TGCCCAAGTC AAAAAGAATA ATGAGGATTA TCGGGCGATT CCCCTCGATG ATCGTCTCTT ATTTGAACTC CTTTTGCAAC AAAATGGCAA AAATTTAGAA CAAGCCGTCG ATCATTTAGT TCATGTCTCA GTGGTACGCT ATCCCATCGG CGAACATCCC CCCATCGGCA TAATCACTCG TATTTTGGGG AGTGACGCAG AAGCGGCAGC CGATACCGAT ATTGTCTGTT GTAAACACGA TTTACCACAA AGTTTCCCCG AAGCAGCCGA AAAAGCGGCC GATAGTTTAC CACAAAGCTT TGACCCCGAA GAAATTGAAC AACGCATCGA TTTACGCCAT CTACTGACAT TTACCTTTGT CGAAGACACT CAACGCGATC TCACTCCCTT TATTGAAACC GCCTTTACCC TAGAGAAAAC TCCGGAACAA TACTGGCAAT TGGGTATCCA TATTACCGAT GTCGCCTATT ATATCGCTCC CGATTCAATT CTCGATAAAA TTGCCAAAAA ACGAGGCACA ACTGTCTATT TAGGCGAAAA AGTCATTCCC CTGTTACCGC AAGGCGTGAC TCAAGGTTGT TCCCTAACCC CTGGACGAGA TATTTTAACT GTTTCAGTGT TGATGACTCT CGATAAAAAT GGCCAACTGC TAGAATTTGA AATCCAACCG ACAGTCATTC AGGTTAATGA GCAGTTGAAG TACTCTGAAG TACAAGCAAT CCTGGCCAAT CTCGATGACA TTTCCCCCGA ACAGGAAGCC TTAGCCGAAC GGCTAAAACA ATTGTTCTTT ACCCTGAGTC CTTTGGTGAA AGCACAACGG ATACAACGAG GCGGCTGTGA AATTCAATTA GAACCGCGAT CGCCCTATCA AGATGAGGGA AGACTGGGGG TGATTTTGGG TTCCTCCGTG TTTCCGGTGC GTTCCCTCTT GATGGAATTG GTGGTGATTG CCCAAAAAGC CGTAGCCGAT CATCTCTATG CCCTAGGGAT TCCCGCTTTG TACTGTACCC AACCTCAGCC CGATTGGGAA GAATTAGAAG ATTTACTGAA ATTAATCGCT AATTTGGGTC TTGATGTCAA ATTAGGCTCT GAAGAAGAAA TTACCCCCCA AGACTATTAC AATCTGACTC AGGCTTTTGG TCAATCCTCG GCGGTTCAGG TCTTAAATTA TTTATTGAAA TCGACCCTAA AATCGGCTAA ATATAGTAGC CATAGTGCCC CTCATTTTGG GTTAGCCTAT GGCGATTGTT ATCTTCACTG TATTTCCCCC GGACAACGCT ATGGCGATTT GTTGGTACAA AGGATTTTAG GAGTATTATT TAAAGAAGGA CGTGATCGCC GAACAAAACA GACAAAAACT GGGGTCAATC TCCGCAGTAG TCGCTGTCAC GGCGAAATTA ATTGGAATGT GTTACCTCCG TCTGTACAAG AGACTTTTGA GGAAGAATTG CATTTAGTAG TCTCTCACCT CAATGATCGG GAGAAATTGG CTGAAGATGC GGAAAAAGAC TTAGATGGAC TCAAAAAAGC CGAGAAAATG AAGGAACGGA CGGGACAAGT TTTCCGAGGG TTAATTACGG GGGTTCAATC CTACGGATTT TTTGTCGAAA TTGAGGATTT ATTGGTAGAA GGACTGGTTC ACGTCAGTTC TCTCAAAGAT GACTGGTATG AATATCGTGC CCGTCATGGC TGTTTGGTAG GACGCAAAAA TCGCATTGCC TACCGCTTAG GCGATCAAGT CCAAGTAGAA GTAAAAAGTG TAGACTATTA TCGGCAACAA ATTGATTTAG TAACCGTTAG TGGGGGGAGT GAAGCCAATA GCGATGATTG GGAAGATGAG TGA
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Protein sequence | MEFSIATLLS HFTDDKLVAA KFLEKKLGCE DEENIEKLQI VLDALERIGI LEKERGKYRR VPDNNLIEAK LRCSSKGFCF AIQDQEDADD IYIRETHLSN AWNGDRVLVE VIKEGTRRRS PEGEVKVILE RANPSLLAQV KKNNEDYRAI PLDDRLLFEL LLQQNGKNLE QAVDHLVHVS VVRYPIGEHP PIGIITRILG SDAEAAADTD IVCCKHDLPQ SFPEAAEKAA DSLPQSFDPE EIEQRIDLRH LLTFTFVEDT QRDLTPFIET AFTLEKTPEQ YWQLGIHITD VAYYIAPDSI LDKIAKKRGT TVYLGEKVIP LLPQGVTQGC SLTPGRDILT VSVLMTLDKN GQLLEFEIQP TVIQVNEQLK YSEVQAILAN LDDISPEQEA LAERLKQLFF TLSPLVKAQR IQRGGCEIQL EPRSPYQDEG RLGVILGSSV FPVRSLLMEL VVIAQKAVAD HLYALGIPAL YCTQPQPDWE ELEDLLKLIA NLGLDVKLGS EEEITPQDYY NLTQAFGQSS AVQVLNYLLK STLKSAKYSS HSAPHFGLAY GDCYLHCISP GQRYGDLLVQ RILGVLFKEG RDRRTKQTKT GVNLRSSRCH GEINWNVLPP SVQETFEEEL HLVVSHLNDR EKLAEDAEKD LDGLKKAEKM KERTGQVFRG LITGVQSYGF FVEIEDLLVE GLVHVSSLKD DWYEYRARHG CLVGRKNRIA YRLGDQVQVE VKSVDYYRQQ IDLVTVSGGS EANSDDWEDE
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