Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cyan8802_1336 |
Symbol | |
ID | 8390648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 8802 |
Kingdom | Bacteria |
Replicon accession | NC_013161 |
Strand | + |
Start bp | 1359213 |
End bp | 1360751 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644979344 |
Product | carotene isomerase |
Protein accession | YP_003137094 |
Protein GI | 257059206 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02730] carotene isomerase [TIGR02734] phytoene desaturase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0735245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00100943 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGAGGGA CATTAACGGC GATCGCATCT AAAAATAAGA CCAATAGTCC AAACTATGAT GTCATTGTCA TTGGCTCAGG GATGGGAGGG TTAGTCACCG CTACCCAATT AGCGGCTAAA GGTGCTAAGG TCTTAGTCTT AGAAAAGTAT CTTATCCCTG GCGGTAGTGC GGGATATTTC CAGCGAGAAG GCTATCGCTT TGACGTGGGT GCCTCGATGA TTTTCGGGTT TGGAACCCAA GGAACCACCA ATTTACTCAC CCGTGCCTTA GAAGCGGTTA ATGTTAGCCT AGAAACGATT CCTGACCCCG TACAGATTCA TTATCATCTT CCCCAAGGAT TAGATCTCAA AGTCCATCGA GACTACGAAA AATTTTTAGA GGAACTAATC GCTAAATTCC CCCAAGAAAA AGCAGGGATT CGTCGGTTTT ACGATGAATG CTGGCAAGTC TTTAACTGTC TCAATGCCAT GGAGTTACTC TCCCTTGAAG AACCTCGCTA TTTGATGCGG GTCTTTTTTC AACATCCTTT TGCCTGTTTG GGGTTAGTTA AGTATTTACC CCAAAATGCC GGAGATATTG CACGACGCTA CATCCGTGAC CCGGAATTAC TGAAATTTAT CGATATGGAA TGCTACTGTT GGTCAGTGGT TCCGGCTGAT CGAACCCCAA TGATCAACGC CGGGATGGTT TTTTCTGACC GCCATTATGG GGGAATTAAC TACCCTAAAG GGGGAGTCGG ACAAATTCCC CAAAAATTGG TGGAAGGACT CGAAAAAGCC GGGGGAGAAA TTCACTATAA AGCGAGAGTC ACCAAAATTT TGCTCGAAAA AGGCAAAGCA GTGGGGGTGC AATTAGCCAA CGGTCAACAA TTCTACGCTA AACGCATCGT GTCTAATGCC ACTCGTTGGG ATACCTTTGA GAAGCTATTA CCTCCGGAAA TGATGCCTAA GTCCGAACAA AAATGGCAAC AGCGTTATCA AAAGTCCCCC AGTTTCCTCA GCTTGCATTT AGGGGTTAAA GCCGATCTTT TGCCGCCAGG AACGGAATGT CACCATATTC TCCTAGAAGA TTGGGACAAT ATGGAAGCAG AACAGGGAAC GATTTTTGTT TCCATTCCGA CCTTACTCGA TCCGAGTTTA GCTCCCCCAG ACCACCATAT TATCCATACC TTCACCCCAA GCTGGATAGA ACAGTGGCAA GGACTTTCTC CCCAAAATTA TCAAAAACAG AAAGATGAAG CGGCCAGTCG CTTAATAGAA CGCTTAGAGC GGATTTTTCC AGGGTTGAAT CAAGCGTTAG ACTATGAAGA GGTGGGAACT CCCCGAACCC ATCGACGCTT TTTAGGACGG GATGGGGGAA CCTATGGACC CATTCCTGGT CGCAAATTAG CGGGGTTGCT CGGAATGCCA TTTAATCGGA CGGCGATCGC AGGACTCTAT TGTGTTGGGG ATAGTACGTT TCCCGGTCAA GGGTTAAATG CGGTGGCTTT TTCGGGGTTT GCCTGTGGCC ATCGTATCGC GGTTGATCTA GGCTTGTGA
|
Protein sequence | MRGTLTAIAS KNKTNSPNYD VIVIGSGMGG LVTATQLAAK GAKVLVLEKY LIPGGSAGYF QREGYRFDVG ASMIFGFGTQ GTTNLLTRAL EAVNVSLETI PDPVQIHYHL PQGLDLKVHR DYEKFLEELI AKFPQEKAGI RRFYDECWQV FNCLNAMELL SLEEPRYLMR VFFQHPFACL GLVKYLPQNA GDIARRYIRD PELLKFIDME CYCWSVVPAD RTPMINAGMV FSDRHYGGIN YPKGGVGQIP QKLVEGLEKA GGEIHYKARV TKILLEKGKA VGVQLANGQQ FYAKRIVSNA TRWDTFEKLL PPEMMPKSEQ KWQQRYQKSP SFLSLHLGVK ADLLPPGTEC HHILLEDWDN MEAEQGTIFV SIPTLLDPSL APPDHHIIHT FTPSWIEQWQ GLSPQNYQKQ KDEAASRLIE RLERIFPGLN QALDYEEVGT PRTHRRFLGR DGGTYGPIPG RKLAGLLGMP FNRTAIAGLY CVGDSTFPGQ GLNAVAFSGF ACGHRIAVDL GL
|
| |