| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_1034 |
|---|
| Symbol | |
|---|
| ID | 8390343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | + |
|---|
| Start bp | 1058473 |
|---|
| End bp | 1060485 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644979049 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003136802 |
|---|
| Protein GI | 257058914 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000188592 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAT CAAGATTAGT CAAACAAACC TTAATATTTG CTGCCCTTGT ATTTGCAGTA
ATTGGGATTT CTTTGTCTAT TTTTTCAGTG TGGAATTTGA GTCAAAATTT ATTATATGAG
TATGAAAATA AGGGATCAGC AATGACAAGA ACAATTGCTG GTTTTACCTC TGAAATCATT
TTTGATGAAA ACCATGAAAC CATTCAAGCA CTCGTAGATT CCTTTGTTGA TATTGAAGGA
CTTGCTTATA TTCTTGTTCA AGATCAAACA GGAGCAATTA TTGCCCATAC TTTTAGTCCA
GGAATTCCTA AATTTTTTCA AGATCATGAA AAGTATAAAT TAAATCAAAT CAATCAAATC
AATCAAAAAA ATTATAGATT TACCCAACAA ACTAAGATTG AAAAATTAAC TATCCCAGAA
ATCGGTCCAA TTATAGATGT AGAACTTCCC ATATTAGGTC TTGCAGGAGG TGATATCCAT
TTAGGATTGT CACGTCATAT TATTAACCAA AAAATTTGGT TAGCAACCAT TGAACAAGTC
ATTATTATCA CCATTCTTTT TATTTTAACT GCTATAGCTG CCTACATGGT TGTTAAACAA
ATTTCTCAAG ATTTAAACAA ACTAATTAAA GGGGTTAACC GAGTTCAACT AGGAGATTAT
GGAGTCACTA TTTCCGTCAA TGATACTAAC GAAATTGGGC TATTAGCTAA CGCTTTTAAT
AGCATGGTGG CAGAAATTCG TCACTATGCT CAGCATTTAA ACAAATCTGT GCAAGAATTA
TCAGATATTA AATATGCCTT AGATCAATCA GCTATTATCG CTATTACTAA TGTTCATGGA
ACCATTATTA AAACCAATGA TAGAATGTCT GAAATTTCTG GATATTCTGA ACAAGAGTTA
CTGGGTAATA ATCATCGGAT GCTGAAGTCT GGTTATCATC CTCCTGAATT TTTTGCTGAT
TTGTGGTCAA CAATTACTCG TGGAGAAATT TGGCAAGGAG AAATTAAAAA TAAAGCTAAA
GATGGTAGAT ATTACTGGGT TGATACAACC ATTGTTCCTT TTAAGAATGA AATGAGAGAA
ATTTTTCAAT TTCTCTCACT GCAAAATGAA ATTACTACTC GCAAAGAATT TGAAGAAAGT
CTCGAAGAAA ACGTCAGAAA AAGAACTGAA CAACTGGCAC AAGCTAATGA AGAAATTACC
ATGCTGAATG TCCAACTAAA AACCGAAAAT TTCCGCATGG GGGCTGAACT TAATCTACTG
CGTCAAATGC AGCAATTGAT TCTTCCTAAA GCTGAAGAAA TTTCAGTAAT CGAAGAATTA
GATATTGCGG GATTTATGGA ACCAGCTAGC GAAGTTGGGG GTGATTATTA TGACGTTTTG
TATACGGATG GAGTGGTAAC ATTAGGAATT GGAGATGTTG CCGGTCATGG TCTAGAAAGT
GGTATTTTAA TGGTTATGAT CCAAACGGCT GTCCGTACCT TAACTGAAAT TAAAGAAGCT
GATCCTGTTA AGTTTTTGTC AACCTTGAAC CGAACAATTT ATAACAATAT TCAACGCATG
AATTCTGATA AAAATTTAAG CCTAGCAGTC TTGAATTATA CGGCAGGACA ACTCAGAATT
ACAGGACAAC ATGAAGAAAC GTTGATAGTA CGTTCTGATG GTAAAATTGA GCGTATTAAT
ACGATGGATT TAGGGTTCCC TATTGGGTTA GATCACGACA TTACCCAATT TATTGATCAA
GTTTTAATTG AGTTAAACCC TGGAGATGGG GTCGTTCTTT ATACCGATGG GATCACTGAA
GCAAAAGATA TTAACAAGAA CCAGTATGGA CTAGAGAGAC TTTGCCGAAT TATTAGTGAG
AATTGGAATA AATCAGCCCA ACAAATTGAA GAAGCTGTGA TTGATGATTT ATTAAACCAT
ATTGGTCAAC AAAAAGTCTT TGATGATCTA ACTTTGGTCG TTGTTAAACA AAAGAAAATC
CTAGATGATG CAGAGTGGAT AATAGATAAC TAG
|
|---|
| Protein sequence | MKISRLVKQT LIFAALVFAV IGISLSIFSV WNLSQNLLYE YENKGSAMTR TIAGFTSEII
FDENHETIQA LVDSFVDIEG LAYILVQDQT GAIIAHTFSP GIPKFFQDHE KYKLNQINQI
NQKNYRFTQQ TKIEKLTIPE IGPIIDVELP ILGLAGGDIH LGLSRHIINQ KIWLATIEQV
IIITILFILT AIAAYMVVKQ ISQDLNKLIK GVNRVQLGDY GVTISVNDTN EIGLLANAFN
SMVAEIRHYA QHLNKSVQEL SDIKYALDQS AIIAITNVHG TIIKTNDRMS EISGYSEQEL
LGNNHRMLKS GYHPPEFFAD LWSTITRGEI WQGEIKNKAK DGRYYWVDTT IVPFKNEMRE
IFQFLSLQNE ITTRKEFEES LEENVRKRTE QLAQANEEIT MLNVQLKTEN FRMGAELNLL
RQMQQLILPK AEEISVIEEL DIAGFMEPAS EVGGDYYDVL YTDGVVTLGI GDVAGHGLES
GILMVMIQTA VRTLTEIKEA DPVKFLSTLN RTIYNNIQRM NSDKNLSLAV LNYTAGQLRI
TGQHEETLIV RSDGKIERIN TMDLGFPIGL DHDITQFIDQ VLIELNPGDG VVLYTDGITE
AKDINKNQYG LERLCRIISE NWNKSAQQIE EAVIDDLLNH IGQQKVFDDL TLVVVKQKKI
LDDAEWIIDN
|
|---|
| |