| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_39650 |
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| Symbol | |
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| ID | 8389286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 4294878 |
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| End bp | 4295480 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644977974 |
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| Product | RNA polymerase, sigma subunit, ECF family |
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| Protein accession | YP_003135733 |
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| Protein GI | 257057901 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.81791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.37663 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACCGCAG CAGCGCCCAC GGATGCTGAT CTCATAGCCG CGCACGCGGC GGGAGATCCC
CATGCGTTCA ACGAGCTCGT CCGACGACAT CGAGACCGGA TGTGGGCTGT AGCCCTGCGC
ACGGTCCGCG ACCCGGAGGA GGCGGCCGAC GCGCTGCAGG ACGCGTTCAT CTCCGCCTTC
CGCGCCGCAT CCAATTTCAG AGCCGAGTCC CAGGTGACGA CGTGGCTACA CCGAATCGTC
GTCAACGCCT GTCTCGATCG GGTGAGACGC AGACAAGCCC GGCCGACGGT ACCGTTGCCC
GACACCTCGC ATCAGGAGCC CGCCGTACCC CGCGACTCGA TGGCGGAACG GGAGACCCGG
CTCATCATCA AGCAGGCACT CGAGCAACTA CCGGAAGAAC AACGGGTACC GATCGTGTTG
GTCGACGTGG AGGGGTACTC CGTCGCCGAG ACGGCACAGC TATTGGGTAT CGCCGAAGGG
ACCGTGAAGA GTCGGTGCGC ACGCGGGCGG GCCAAACTCG CGAAACTTCT CGGTTATCTG
CGGAACCCGA GTAGCGAGGG TGGCGTCCCA ACTCACGAAA GCAAACACGG GGAGGGACGA
TGA
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| Protein sequence | MTAAAPTDAD LIAAHAAGDP HAFNELVRRH RDRMWAVALR TVRDPEEAAD ALQDAFISAF
RAASNFRAES QVTTWLHRIV VNACLDRVRR RQARPTVPLP DTSHQEPAVP RDSMAERETR
LIIKQALEQL PEEQRVPIVL VDVEGYSVAE TAQLLGIAEG TVKSRCARGR AKLAKLLGYL
RNPSSEGGVP THESKHGEGR
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