Gene Svir_39520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_39520 
Symbol 
ID8389273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4275601 
End bp4276260 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content67% 
IMG OID644977962 
Productprotein of unknown function (DUF1707) 
Protein accessionYP_003135721 
Protein GI257057889 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.733085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.653702 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGG AACAGAGCAA CGAGGAACAG CTCTCGGCGG AGCAGCGCAG ACTTCGGGAG 
CTCCGGGTCT CCGACCAGGA GCGAGAGCAC GTCGTCGAAT TGCTGAAAAC CGCCACCGGG
CGGGGCCTGA TCGACCTCGA CGAGTTCAGT GAACGGGCCG ACACCGCCTA CGCCGCGCGC
ACCAGAGGCG AACTGAACAA GGTCCTCATC GATCTGCCGG GCCTGGTGCA CCCCGAGGCC
GCCGTCATCG GAGTCGGCAA TCGGACCGTC GCGGCCGGTG TGACCGTGCC GATCCCCGTG
CCGGGCGAAC AACTCGTCCT CCGCGCCCAC GGTTCGAACC TGGTGCGCAA GGGGCAGTGG
ACGGTGCCGT CGGCGATCCT GGTGCGCAAC CGTTACGGCG ACGCCCGCCT CGATTTCAGC
GAGGCGAACA TGACCAGTGA CGTGGTGCAC ATCGAGCTCG ACGTGAAATG GGGGTCCGTC
CACCTCATCA TTCCCGAGCA CGCGTCGCTG GACCTCAACG CGTTGAACGA CGTGAAGTGG
TCGAGCGTGA ACGACAAGAC CCGAGGGGGG ACGGGCGCTC CCCGGTTCGT CGTCACCGGC
CGCCTCACAG GCAGCTCCCT GAACGTCCGG CACCCACGCA GGGGCCTGTT CTCGTTCTAG
 
Protein sequence
MSEEQSNEEQ LSAEQRRLRE LRVSDQEREH VVELLKTATG RGLIDLDEFS ERADTAYAAR 
TRGELNKVLI DLPGLVHPEA AVIGVGNRTV AAGVTVPIPV PGEQLVLRAH GSNLVRKGQW
TVPSAILVRN RYGDARLDFS EANMTSDVVH IELDVKWGSV HLIIPEHASL DLNALNDVKW
SSVNDKTRGG TGAPRFVVTG RLTGSSLNVR HPRRGLFSF