Gene Svir_39230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_39230 
Symbol 
ID8389244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4246818 
End bp4247726 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content65% 
IMG OID644977933 
ProductABC-type multidrug transport system, ATPase component 
Protein accessionYP_003135692 
Protein GI257057860 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTGG CAAGCCTACG TGGCGTGACC AAACGCTACG GCTCTCACAC AGCCGTGTCC 
GACGTGTCCT TCGAACTGCA CGCCAACCGC ATCCACGGTC TGCTGGGCCG TAACGGTGCG
GGTAAGAGCA CCGTGATGCG CCTGCTCACC GGTCAGGACC TCCCGACCGA GGGCGACATC
GAGGTGTTCG GTGGGAGCCC GTACGAGAAC GCGGACGTCC TGCGGCGGAT CTGCTTCATC
AAGGAGTCGC AGAAGTATCC CGACGTCTTC AAGGCGCGGC ACGCGTTGAA GGCCGCGAGT
CTGCTCTTTC CGAACTGGGA CGACGACTTC GCCGCCGAAC TCGTCGAGGA GTTCAAACTC
CCCCTGAACC GGCAGGTCAG AAAGCTGTCG CGGGGCCAGT TGTCGATCGT CGGCGTGATC
ATCGGATTGG CCGCGCGGGC ACCGCTGACC CTCTTCGACG AGCCGTATCT GGGACTGGAC
GCCGTGGCGC GGCAGTTGTT CTACGACCGA CTGCTCGCCG ACTACGCCGA ACATCCACGC
ACGATCGTGC TCTCGACCCA CCTGATCGAC GAGGTCAGCG ATCTCATCGA GCACGTCATC
GTGATCGACT CCGGGCGCAT CCTCATGGAC GACAGCGCTG AGAACCTGCG GTCGCAGGCG
ATCACGGTCA CGGGGCCGAA GCAGGCCGTG GAGGACTTCG CCGCGGGCTA CACCGAACTC
CACCGTGAGG AACTCGGGGG ATTCCTCAGG GTCACGCTCA GCGGTGCGGC ACCGAGGCGC
GACGTCCCGA ATCTGCGGGT GGAACCCGTT TCGCTGCAAC AACTCGTGGT GCGCACGACC
CAACTGTCCG AGGCGGAGCG AGCGCTGGTC GGCGCTTCGA ACGGCACGAA CGGCGAGGAG
GCCAGGTGA
 
Protein sequence
MTVASLRGVT KRYGSHTAVS DVSFELHANR IHGLLGRNGA GKSTVMRLLT GQDLPTEGDI 
EVFGGSPYEN ADVLRRICFI KESQKYPDVF KARHALKAAS LLFPNWDDDF AAELVEEFKL
PLNRQVRKLS RGQLSIVGVI IGLAARAPLT LFDEPYLGLD AVARQLFYDR LLADYAEHPR
TIVLSTHLID EVSDLIEHVI VIDSGRILMD DSAENLRSQA ITVTGPKQAV EDFAAGYTEL
HREELGGFLR VTLSGAAPRR DVPNLRVEPV SLQQLVVRTT QLSEAERALV GASNGTNGEE
AR