| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_38560 |
|---|
| Symbol | |
|---|
| ID | 8389177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 4174391 |
|---|
| End bp | 4175554 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644977867 |
|---|
| Product | chaperone protein DnaJ |
|---|
| Protein accession | YP_003135627 |
|---|
| Protein GI | 257057795 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | [TIGR02349] chaperone protein DnaJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0413563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGA GGGAATGGAT CGGAAAGGAC TATTACCGCG AATTGGGCGT CTCCCCCGAC
GCCTCCGCCG AGGAGATCAA GAAGGCGTAT CGCAAGCTCG CCAGGGAGAA CCATCCGGAC
GCCAATCCGG GCAACCCCGA GGCCGAGAAG AAGTTCAAGG CCGTGTCGGA AGCCTACGGC
GTGTTGTCGG ACCCGGAGAA ACGCAAGGAG TACGACGAGA CCCGTAGGCT GTTCGGCTCC
GGTGGCGCCG GTGGTTTCAA CTTCCCCGGA GGCGGGAGCG GTGGCTTCGA CTTCAGCGAC
CTGTTCGGCC AGACCGCGGG CGGCGGCTTC GGCGGCCTCG GGGACATGCT CGGCAACCTG
TTCGGCCGCC GGGGCGGAAC CGCGACGTCG ACCATGCGCG GACAGCGTGG GGCGGACGTC
GAGACCGACG TCCGCATCGA CTTCGTCGAG GCCGTACGGG GCGCGACGTT GCCGTTGCGG
CTGTCGAGTC CCGCCACCTG TGGCACGTGC GGCGGTAACG GCGCGCGGCC GGGAACGCGC
CCGCGCCCGT GTCCGACGTG CGGTGGGGCG GGCCTGGTGA GCCGTAGCCA GGGCGCGTTC
GCGTTCACGG AACCGTGCCG TGACTGCCGT GGCCAAGGGG TGCGGATCGA CGACCCGTGC
CCCGAGTGCG GGGGCGAGGG CGTCAGTACG CGCACGAGGA CGCTGACGGT GCGCATCCCC
GCCGGGGTGG ACGACAACCA GCGCATCCGG TTGGCCGGTC AGGGCGAGCC GGGCCGGGGC
GGCGCGCCCG CGGGCGATCT GTACGTGCGG GTGCACGTCG AGCCGCATCC GGTGTTCGGT
CGCTCCGGCA ACGACCTGAC CCTCACGTTG CCGGTGGAGT TCTCCGAGCT CGCCCTGGGC
GCGACCGTCA CGGTGCCGAC GCTCGAGGAC AAGGTGACGG TGAAGATCCC GCCCGGCACG
GCGAACGGTC GGGTGCTGCG GGTGCGCGGC AAGGGCATCA CCAAGCGGGA CGGCACCCAA
GGGGATCTTC TAGTCAAACT GCAGGTTGCG GTGCCTTCTA AGCTGGACGA AAAGGCTGCG
CAGGCGCTGC GGAACTACGC CGACTTGGTC GCAACGCACG ACCCGCGGCC GGAGATCACC
GCGCTGTTGC GAGAGAGGGA GTGA
|
|---|
| Protein sequence | MNAREWIGKD YYRELGVSPD ASAEEIKKAY RKLARENHPD ANPGNPEAEK KFKAVSEAYG
VLSDPEKRKE YDETRRLFGS GGAGGFNFPG GGSGGFDFSD LFGQTAGGGF GGLGDMLGNL
FGRRGGTATS TMRGQRGADV ETDVRIDFVE AVRGATLPLR LSSPATCGTC GGNGARPGTR
PRPCPTCGGA GLVSRSQGAF AFTEPCRDCR GQGVRIDDPC PECGGEGVST RTRTLTVRIP
AGVDDNQRIR LAGQGEPGRG GAPAGDLYVR VHVEPHPVFG RSGNDLTLTL PVEFSELALG
ATVTVPTLED KVTVKIPPGT ANGRVLRVRG KGITKRDGTQ GDLLVKLQVA VPSKLDEKAA
QALRNYADLV ATHDPRPEIT ALLRERE
|
|---|
| |