| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_37050 |
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| Symbol | |
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| ID | 8389026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 4027646 |
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| End bp | 4030405 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644977717 |
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| Product | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein |
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| Protein accession | YP_003135481 |
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| Protein GI | 257057649 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.790153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0286025 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCAC ACATCCACGG GGAGTTGTCC ACCTGGGCGT CATGCGACCG GGAGGACATC
ACCGACCTTG CGCTCGCCGC CAGCACCGCG AGTGCGTGGT CGGTGGATCT CCTCGACTAC
GACGTTACGT GGAGCCCCCG GCTGGCCGAG ATTCTCGGAG TGGACACCCA GAACGCGGAC
GCCGTCCGGC AACGCCTACT GGATTTGCTC GAGCCGTTGA CTGTCGCAGC GAGAAATTAT
CCGGTGTGGC ACAATTTCGA TCTTGAGCAA TGTCACACGA CACCTGGCGG TGAAACCCGA
TGGACGCGCT TTCTCGCCCG CGCTCAAGGC AATGCCGCAA CGGGAAAGGT CGAACGGCTC
GTGGGAATCG CCACGGACGT GACTGAACGG TTCAACAACA CACGGGAACT GGACGATCTC
GCCGATCGCT ACCGCCTGCT GGTGGAACTC AGTCCCGAGG GAATCTGTGT ACACCAGGAC
GGAAAACTGG TGTACATCAA TCCGGCCGCG GCCCGATTCG TCAAGGCCGC CAGCCCCACG
CAGTTATTGG GCCGACCGAT CACGGATTTC GTACGCCCCG CCGCGGTGCC GGAACTGCTG
CGCCGGATTT CGTCGCTGCG GGAACCCGGT GAGGCCACGG AGCCCACCGA GGTGCGACTG
CGCACACTCG ACGGTGGTTC GCTGTGCATC GAGTCGGTGT CGGTGCGCAT CACGTGGCGG
GGCAAACCCG CCTACCAGGT GATCATGCGG GACATCACCG CCCAGAAGGC CGCTCAAGCC
GCACTGCGTT ACCAGGCGGC GTTGGTCCGC CATGCCAGTG ACGCCATCAT CGCGACGACG
TCGGACGGCA TGGTGACGAG CTGGAACCCG GCGGCCGAAA CCGTCTACGG CCACAGCGAG
GACCAGGCAC TGGGCAGGCC GGTGAGCGAA CTCGTCGGCG TGACACTCGA TCCGGCGACC
ATCGTGGCCG AGGGTGGGGT CGTCGAGGCG GAACACCGCA AAGCCGACGG TTCCGCGTTG
ACGGTGCGCG TGTCGGCCTC TCCCATGGAC GACGGCTACG TGCTGATGTG CGCGGACGAA
ACGGCACGTC GGACGGTCGA GCGCCGCTAC CGCACGGTGG TGACGGCACT CGACGAGGGT
GTCGTGGTGA TCGACGAAAA CGAACTCGTG GGATCGGCGA ATCCGGCGGC GGGTCGCATC
CTCGGTCTGC CCGTCGAGGC CATGATCGGC TGCTCGCCGG CCCTGTTCCC GCTGTACGAC
GAGTCCGGCG CTCGGGTCCC GCCCAGCGAA TACCCGTCGG CGCTGACGAG GCGCACCGGC
CACGCGTCAC ACGGCCGTGT GCTGCGGGCC CGACGCCCCG ATGGCCAGTG GGTGTGGCTG
TCGATGAGCT GCCGACCGTT GGACTCGGAC AAGACGCCAC CTCACGAGGT CGTGGTCTCG
TTCACCGACA TCACCGAACG GCGGGCCATC GGCGAACGAC TCGAACACGA CGCCACCCAC
GATCCGCTCA CCAACCTGGC GAACCGGACG TTGATCCTCC AACGGCTGGA GGAGATGCTG
CGGCGTTCTG GGGGACGCCC GGTGTGCGTG CTTTTCATCG ACCTGGACAA GTTCAAGGTC
ATCAACGACT CGCTGGGGCA CGGCATCGGC GACGAGGTGC TGCGTATCGC GGGCGAACGG
CTGAAGAACT GTGTACGACA GGGCGACCTG GTCGGCAGGC TCGGAGGTGA CGAGTTCGCC
ATCGTGGCGT CCGATATGGC ACACGACAGC CAGATCCAGG CCCTGATCGG CCGCATTCGA
CGGGCACTGA CGGAACCCGT CGTCGTGGAG GGTCGTCGAC TGCGGATCGA CGCCAGCATC
GGCGTGGTCA CGACACACGC GGACGACGAA CGCTCGGCCG AGGACCTGTT GCGGGACGCC
GACGTGGCCA TGTACCAGGC GAAGACCCGG GGCCGGGGCA GGTACGAGTT CTTCGACGTC
GAGTTGCGGG AACGCGTACA ACGGCAACTG CGTCTGGAGC AGGACCTGCG GGAGTCCGTA
CGCGGCGGTC AACTGTGGGT GGCCTACCAG CCCGTGGTGG ATCTGCGCAC CCAGCAGCGG
GTGGCCGTCG AGGGGCTGCT GCGCTGGGAC CATCCCGTGC ACGGTCGGAT CTCCCCGGGC
GAGTTCATCC CGCTGGCGGA GGAAAGCGAC CTGATCAACC TGATCGGCGG GCACATGCTG
CGCACCGCGA CCCGGGAACT GGCTTCCCGG CGCAGGCACA GCGGTGTGCG CACTCAACTC
GCCGTGAACG TGTCGGCGCG ACAACTCGAC GACGGTTCGG TGGTGTCCGC CGTGAACGAG
GCCCTCCGCG CGACGGGCCT ACCGCCGGGT GAGCTGTGCC TGGAGATCAC CGAGAGCGCT
TTGATGCAGG AGCCCGAAGC CGCGGCCGAT GTGCTCACCG CGCTACGGGA CCTCGGTGTC
AGACTGGCGA TCGACGACTT CGGTACGGGG TATTCGTCGC TGGCGCAGCT GTGGAAGTTA
CCGCTGGACA CACTGAAGAT CGACCGCTCG TTCGTGGCCG GGCTCGACGG GCCCAACCAT
CCCGACGCCG AGGCGATCAT CAAGGGGATC ATCACGATGG CTCATTCGAT GGGGCTCACG
GTGGTCGCCG AGGGGACGGA GAACGAACGC CAGATCGCCA TCCTGCGTGA ACTCGGCTGC
GACCAGGCGC AGGGCTTCCA CCTCGGCAAA CCGGCCCCCG CGCACGAGGT GTTCGGCTAG
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| Protein sequence | MEAHIHGELS TWASCDREDI TDLALAASTA SAWSVDLLDY DVTWSPRLAE ILGVDTQNAD
AVRQRLLDLL EPLTVAARNY PVWHNFDLEQ CHTTPGGETR WTRFLARAQG NAATGKVERL
VGIATDVTER FNNTRELDDL ADRYRLLVEL SPEGICVHQD GKLVYINPAA ARFVKAASPT
QLLGRPITDF VRPAAVPELL RRISSLREPG EATEPTEVRL RTLDGGSLCI ESVSVRITWR
GKPAYQVIMR DITAQKAAQA ALRYQAALVR HASDAIIATT SDGMVTSWNP AAETVYGHSE
DQALGRPVSE LVGVTLDPAT IVAEGGVVEA EHRKADGSAL TVRVSASPMD DGYVLMCADE
TARRTVERRY RTVVTALDEG VVVIDENELV GSANPAAGRI LGLPVEAMIG CSPALFPLYD
ESGARVPPSE YPSALTRRTG HASHGRVLRA RRPDGQWVWL SMSCRPLDSD KTPPHEVVVS
FTDITERRAI GERLEHDATH DPLTNLANRT LILQRLEEML RRSGGRPVCV LFIDLDKFKV
INDSLGHGIG DEVLRIAGER LKNCVRQGDL VGRLGGDEFA IVASDMAHDS QIQALIGRIR
RALTEPVVVE GRRLRIDASI GVVTTHADDE RSAEDLLRDA DVAMYQAKTR GRGRYEFFDV
ELRERVQRQL RLEQDLRESV RGGQLWVAYQ PVVDLRTQQR VAVEGLLRWD HPVHGRISPG
EFIPLAEESD LINLIGGHML RTATRELASR RRHSGVRTQL AVNVSARQLD DGSVVSAVNE
ALRATGLPPG ELCLEITESA LMQEPEAAAD VLTALRDLGV RLAIDDFGTG YSSLAQLWKL
PLDTLKIDRS FVAGLDGPNH PDAEAIIKGI ITMAHSMGLT VVAEGTENER QIAILRELGC
DQAQGFHLGK PAPAHEVFG
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