| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_36820 |
|---|
| Symbol | |
|---|
| ID | 8389003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 4001715 |
|---|
| End bp | 4003589 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644977694 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003135459 |
|---|
| Protein GI | 257057627 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.19264 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCAA CGCCGTGGCT CGACGTATTG GACGAGGCCA TCCGGTCGTG CGCCGTGCAC
GACCGCACCG ACCTCGGACG GCTCCTGCGT GCCCGCCGTG CCGAGCTGGC GGGTCCCAAG
ATCCGCGTCG TCGTGCTCGG CGGATCGGGA CAGGGCAAGA GCCAGTTGCT CAACGGTCTG
CTCGGGTCCA CCGTGTGCGC GGTGGGCGAC GACCTCACCA CGACCGTACC CACCGTGGTC
GAGTACGCGC CCTCGCCCGT GGCGAGACTC GTCCCGGGTG ATCCGGCTCC ACTGCTGGAA
CCGGTGCTGC GGGACAGTCT GTTGCTCGAG GCGTCCGGAC ACGACACTCC CGCGTTGACG
AGCGCTGAAC GCGAACCCGT TCCGGTCGAG TCGGCCTCGG CGGAGGGGAA TCGTCGCAAC
GGGATAGCGA GGGTCGAAAT AGGACTTCCT CGCAAACTTC TCGAAAGTGG ACTGACCCTG
ATCGACACGC CACCCTGCGG CACGGACGGC GACCACCACG GCGACCACGC CCGGGCCGCG
CTGTCGACCG TGTCGCAGGC CGACGCCGTA CTGCTGGCCA GCGATGCGAC TCGCAGTTTC
TCGCCCGCGG AACTGGACAT CGTGGAGCGG GCGTTGACCG TGTGTCCGAC GGTGGCCGTC
GTCCTCACCA AGACCGACCT GGTGCCGGGG TGGCAACGGG TGGTCGCGCA CAACCGTGCC
CGGCTCGAAC GTCGGGGGCT GCCCGTGACG GTGTTTCCGG TGTCATCGGC CTTGCGGTTG
TTGGCCGCGC GGACGAACGA CACCGGGCTG AACGACGAGT CGGGCTTCCC CGCCCTGATC
TCCTACCTGC ACCACGAGTT GATGGGCAAC GCCGACGTGC TGCGTCGCCG TTGCGCGGGT
GCGTTGACCC GGCTGACCGT GGACACCCTG GTGGAGCCGC TGCGGGAGCG GCTCAACGAC
CTGAAGCAGG GCGGCGACGG TGGACTCGTC GCACGTTACC GTCGCCTGAC GTCCCGGTTG
GAGCAACTGC AACGGGAGTC GGCGCGGTGG CAGACCATGC TGTCCGATGA GGTGGCCGAC
CTCACCGCCG ACCTCGACTA CGACCTGCGT GACCGAACCC GTCGCATCCT GCGGGAGGCG
GACGAGTACT TCGAGGTCGC CGACCCCGCC AAGGACTGGC CGGAATTCGA GGAATGGCTC
CGGGAGAACC TGCGGGCCGC GGCCGAGGCC AATTCCGGTT GGTTGCTCGA CAGGTTCGAG
TGGATCACGC GTAAGCTCGC GAACGCCATC TCCCCCCGCC GGGACGACGT GTTCGCGCCG
GATTCGGTGC TGTCCGACCC ACCGGCCGGG GAGTTGGACA AACTGGGCGC ACCGAACGTC
GAGCGGTTCA CGGTCGGGCA GAAACTCTTC GTCGGTATGC GTGGTTCGTA CAGTGGGTTG
TTGATGTTCG GGCTCGCGAC GACGTTGGCC GGGATGAGTC TCATCAACCC CATCTCGATC
GGTGCGGGGG TGGCGTTCGG CGCCAAAAGT GTCCTGGACG AACGCAGTAC CCGACTCAAA
CGGCGCCAGG CCGCGGCGAA GACGGCCGCC CAGCGATACG TCGACGACTT CTTCCTCGCC
TACGGCAAGG AGAGCAAGGA CACCGTACGG CTGATCCACC GGGAGCTGCG TGACCGGTGC
ACGGCCGTGG CGCACGAACT GCGCACGGAG ATCAGTGACG CGGCCCAGCG GGTGAAACAG
GCTATCGAGG CCGAGGCGGC CGAACGGAAC ACGGCCGTGC GGAAAGTGGC GACCCGTGTC
GAGGAGCTGG AGCTGTTGCG TCGGCGGGCC GACGCGCTGG CTCCCCAGCC GGTTCCGCGA
GGCCTGACGG CATGA
|
|---|
| Protein sequence | MKATPWLDVL DEAIRSCAVH DRTDLGRLLR ARRAELAGPK IRVVVLGGSG QGKSQLLNGL
LGSTVCAVGD DLTTTVPTVV EYAPSPVARL VPGDPAPLLE PVLRDSLLLE ASGHDTPALT
SAEREPVPVE SASAEGNRRN GIARVEIGLP RKLLESGLTL IDTPPCGTDG DHHGDHARAA
LSTVSQADAV LLASDATRSF SPAELDIVER ALTVCPTVAV VLTKTDLVPG WQRVVAHNRA
RLERRGLPVT VFPVSSALRL LAARTNDTGL NDESGFPALI SYLHHELMGN ADVLRRRCAG
ALTRLTVDTL VEPLRERLND LKQGGDGGLV ARYRRLTSRL EQLQRESARW QTMLSDEVAD
LTADLDYDLR DRTRRILREA DEYFEVADPA KDWPEFEEWL RENLRAAAEA NSGWLLDRFE
WITRKLANAI SPRRDDVFAP DSVLSDPPAG ELDKLGAPNV ERFTVGQKLF VGMRGSYSGL
LMFGLATTLA GMSLINPISI GAGVAFGAKS VLDERSTRLK RRQAAAKTAA QRYVDDFFLA
YGKESKDTVR LIHRELRDRC TAVAHELRTE ISDAAQRVKQ AIEAEAAERN TAVRKVATRV
EELELLRRRA DALAPQPVPR GLTA
|
|---|
| |