| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_36080 |
|---|
| Symbol | |
|---|
| ID | 8388929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3932806 |
|---|
| End bp | 3933990 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644977623 |
|---|
| Product | trypsin-like serine protease with C-terminal PDZ domain protein |
|---|
| Protein accession | YP_003135390 |
|---|
| Protein GI | 257057558 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.48254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.498505 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACTGGG TCGACCTACT GGTGATCCTG CTGGCCCTGC TCGCTGCCGT CTCCGGTGCC
CGTCAGGGGT TCGTCGTCGC GTTGCCCGCC TTCCTCGGGG TGATCGTCGG CGCGGTACTG
GGAATCCGAA TCGCCCCGTT CATCGTCGAG GAGGTCGACC ATCCCACCGC CAAGGTGGCG
TTCGCGGTCG GCACGGTGAT CTTCCTCGTC GCGCTCGGCG AGACCGTCGG CGTGTATCTC
GGGAACAAGC TCAAACGCAG GATCTCGTCA TCCAAGTTGT CCGGTGTGGA CAATGCGCTG
GGTGCCGTCG TGCAAGGCGC CGTGGTGTTC GTGGTCGCTT GGCTCATCGC CCTGCCGTTG
ACCAGCGTCG CCGCTCTGCC CGGACTGACC AAGGCGATCA ACGAGTCGTC CGTGCTGGGT
GGGGTCAACG ACCTGATGCC CGAGGCGGCT CAGGGCCTGC CGGGGGAACT GCGCAATCTG
CTCGACGAAT CCGGCTTCCC GTCGATCCTG GCACCGTTCC AGGAAGCTCC GGTGCGCCAG
ATCAACCCGC CCGACCCGGC GTTGCAGAAC AGTGCCGTGG TCCAGAACGT GCGGCCGAGT
GTGCTGAAGG TACGCGGCAC CGCGCCGAGC TGTTCCCGAT CCCTGGAGGG CACGGGGTTC
GTCATCGACG AAGAACGGGT GATGACCAAC GCGCACGTCG TCGCGGGTAC CGAACAGGTC
CTGGTGGAGA CGACACGGGG TCACTTGGAA GCCGAGGTCG TGCACTACGA CCCCGCCACC
GACGTCGCCG TGCTCGCCGT CCCCGGGCTC GACGAGAAGC CACTGCCGTT GGCGGAGGAG
CCGGCCGAGG CGGGCGACGA CACGATCGCG CTTGGCTACC CCCTCGACGG ACCGTACACC
GCCACACCGA CGCGGATCCG GGAGCGGATC ACCTTACGCG GACCGGACAT CTACGACTCG
CGAACCGTGC AGCGCGACGT CTACACCGTT CGGGGGCAGG TGCGCAGCGG TAACTCGGGT
GGTCCCCTGA TCGACCCGGA CGGCCGTGTC GTCGGTGTCG TGTTCGGTGC CGCGGTGGAG
GACCCCGACA CCGGGTTCGT GCTCACGGCC GACGAGGTGA GCGACGAGAT CGAACAGGCC
CGCTTCCTGA CGGCCGCGGT CGACACGGGG CCCTGCACGG GTTGA
|
|---|
| Protein sequence | MNWVDLLVIL LALLAAVSGA RQGFVVALPA FLGVIVGAVL GIRIAPFIVE EVDHPTAKVA
FAVGTVIFLV ALGETVGVYL GNKLKRRISS SKLSGVDNAL GAVVQGAVVF VVAWLIALPL
TSVAALPGLT KAINESSVLG GVNDLMPEAA QGLPGELRNL LDESGFPSIL APFQEAPVRQ
INPPDPALQN SAVVQNVRPS VLKVRGTAPS CSRSLEGTGF VIDEERVMTN AHVVAGTEQV
LVETTRGHLE AEVVHYDPAT DVAVLAVPGL DEKPLPLAEE PAEAGDDTIA LGYPLDGPYT
ATPTRIRERI TLRGPDIYDS RTVQRDVYTV RGQVRSGNSG GPLIDPDGRV VGVVFGAAVE
DPDTGFVLTA DEVSDEIEQA RFLTAAVDTG PCTG
|
|---|
| |