Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_35950 |
Symbol | |
ID | 8388916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3917461 |
End bp | 3919317 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644977610 |
Product | beta-glucosidase-like glycosyl hydrolase |
Protein accession | YP_003135377 |
Protein GI | 257057545 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.564939 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.211927 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCACTG CCAAAGCCCG TCCTTGGAAA GCCTGCGCGG CCGCCGCGCT CGTAGGCTTA CTCGCCGTGA CCACCGGCTC GGCATCCGCC CAACCGCATT CCCCCTCGCC ATCGGGTGAC CAGCAGACCC AACGCCACTG GGGGAAGCGG AGCTGGCCCG AGCGCACCTT GCGTGCGATG ACGTTGGAAC AGAAGGTCGG CCAGTTGTTC GTCGCCGACG TCTGGGGCCA GTCGGCCGAC GAAGCGCATC CCGGCAACCA GGAGAAGTAC GGCGTCGACA CCCCCGCCGA AGTGGTGCGC AAGTACCACG TCGGCGGCGT CATCTACTTC AACCACAGCG GCACCGACAA CATCGAGACA CCGCGGCAGG TCGCGCGGCT GTCCAACGGT CTCCAGCGCG CGGCCCTGCA GTCACAGCCG CGTGTCCCGC TGATCGTCTC CGTGGACCAG GAAGGCGGCC GGGTCACCCG CATCGCCGAG CACGTCACCG AATACCCGAG TGCCATGGCG CTCGGGGCGT CCCGGGATGT CGAGGGTGCT CGCACGGCCG CGGCCATCAG CGCGGCGGAG CTGCGTGCCA TGGGGATCAA CCAGAACTTC GCGCCGGTCG CCGACGTGAA CTCCAACCCG CTGAATCCGG TGATCGGTTC CCGCTCGTTC TCGGCGGACC CCGAATTGGC GGGTGAGTTC GTCGAAGCAC AGGTGGACGG CTACCAGAAC TCGCGACAGC CGCGGCAGAC GGTGTCGGCC GCGGCCAAGC ACTTCCCGGG CCACGGTGAC GCCTCCGCCG ACAGTCACAT CGACCTACCG GTGATCGACC GCAGCGAAGA GGACTGGCGG GCCAACGATC TCCCGCCGTT CGAACGGGCC GTCGAGGCGG GTATCGACGC CATCATGACC GCCCACATCT CGGTGCCGAG CCTCGACGAC TCCGGTGACC CGGCGACGCT TTCCGAACCG ATCATCACCG GACTGCTGCG CGAGGAGCTG GGTTACGACG GCGTGGTGGT CACGGACTCG CTCGGCATGG CCGGCGTGCG GCAGATGTAC CCCGACTCCG AGATCCCGGT CCGGGCGTTG GAGGCGGGTG TCGACCAGAT GCTCATGCCG CCGGACCTCG ACGCGGCCGT GAACGGTGTG CTCGACGCGG TGGCCAGCGG CCGGATCACC GAGGAACGCA TCGACGAGAG CGTGCTGCGC ATCCTGAAGC TGAAGTACGA GCGGGGCATC GTGTCCTCCC CGTTCGTCCC CGAGCACCGG GCCGAACACG TGGTCGGCAC CAAGCGCAAC CGCGACACGG TGCAGCGCAT CACCGACGCC ACGACCACCG TGCTCAGCGA TGATGCGAAG CTGCTGCCGC TGGACTCCGG CGTGCAGAAC GTGCTCGTCA CCGGTTGGAA CCGGCCGGAC TACCCCGGTT ACGCCGCCGA ACCCGTCGAC GACCTCGCGG ACGCGTTGTC GCAGCGCAGC GACGCGAACG TCACCAGCAT GCCCACCGGA ACCAACCCGG ACCCGGCCAC CATCGACGAG GTCGTGGCCG CCTCCGACGA CGCCGACCTG GTGATAGTGC TCACCAACGG CTTGCGGGGC AGCGAGGGAC AACGTGAGCT GGTTGAGCGG CTGACCAGCA CCGACACCTC CGTGATCGCG GTCGCCGTTC AGGAGCCGTA CGACCCCGGC TACGCGGAGG TTCCCACCTG GATCGCCACC TACGACTGGC GTGGCGTCAC CATGACCTCG CTGGCCAAGG TGCTCGTCGG AGAGCACTCC CCCGAAGGGA CGCTGCCCGT CACGATCCCG CACGGCGACG ACCCGGACCA GACCCTGTAC CCGTTCGGCC ACGGGCTGAC GTGGTGA
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Protein sequence | MTTAKARPWK ACAAAALVGL LAVTTGSASA QPHSPSPSGD QQTQRHWGKR SWPERTLRAM TLEQKVGQLF VADVWGQSAD EAHPGNQEKY GVDTPAEVVR KYHVGGVIYF NHSGTDNIET PRQVARLSNG LQRAALQSQP RVPLIVSVDQ EGGRVTRIAE HVTEYPSAMA LGASRDVEGA RTAAAISAAE LRAMGINQNF APVADVNSNP LNPVIGSRSF SADPELAGEF VEAQVDGYQN SRQPRQTVSA AAKHFPGHGD ASADSHIDLP VIDRSEEDWR ANDLPPFERA VEAGIDAIMT AHISVPSLDD SGDPATLSEP IITGLLREEL GYDGVVVTDS LGMAGVRQMY PDSEIPVRAL EAGVDQMLMP PDLDAAVNGV LDAVASGRIT EERIDESVLR ILKLKYERGI VSSPFVPEHR AEHVVGTKRN RDTVQRITDA TTTVLSDDAK LLPLDSGVQN VLVTGWNRPD YPGYAAEPVD DLADALSQRS DANVTSMPTG TNPDPATIDE VVAASDDADL VIVLTNGLRG SEGQRELVER LTSTDTSVIA VAVQEPYDPG YAEVPTWIAT YDWRGVTMTS LAKVLVGEHS PEGTLPVTIP HGDDPDQTLY PFGHGLTW
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