Gene Svir_35950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_35950 
Symbol 
ID8388916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3917461 
End bp3919317 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content68% 
IMG OID644977610 
Productbeta-glucosidase-like glycosyl hydrolase 
Protein accessionYP_003135377 
Protein GI257057545 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1472] Beta-glucosidase-related glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.564939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.211927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACTG CCAAAGCCCG TCCTTGGAAA GCCTGCGCGG CCGCCGCGCT CGTAGGCTTA 
CTCGCCGTGA CCACCGGCTC GGCATCCGCC CAACCGCATT CCCCCTCGCC ATCGGGTGAC
CAGCAGACCC AACGCCACTG GGGGAAGCGG AGCTGGCCCG AGCGCACCTT GCGTGCGATG
ACGTTGGAAC AGAAGGTCGG CCAGTTGTTC GTCGCCGACG TCTGGGGCCA GTCGGCCGAC
GAAGCGCATC CCGGCAACCA GGAGAAGTAC GGCGTCGACA CCCCCGCCGA AGTGGTGCGC
AAGTACCACG TCGGCGGCGT CATCTACTTC AACCACAGCG GCACCGACAA CATCGAGACA
CCGCGGCAGG TCGCGCGGCT GTCCAACGGT CTCCAGCGCG CGGCCCTGCA GTCACAGCCG
CGTGTCCCGC TGATCGTCTC CGTGGACCAG GAAGGCGGCC GGGTCACCCG CATCGCCGAG
CACGTCACCG AATACCCGAG TGCCATGGCG CTCGGGGCGT CCCGGGATGT CGAGGGTGCT
CGCACGGCCG CGGCCATCAG CGCGGCGGAG CTGCGTGCCA TGGGGATCAA CCAGAACTTC
GCGCCGGTCG CCGACGTGAA CTCCAACCCG CTGAATCCGG TGATCGGTTC CCGCTCGTTC
TCGGCGGACC CCGAATTGGC GGGTGAGTTC GTCGAAGCAC AGGTGGACGG CTACCAGAAC
TCGCGACAGC CGCGGCAGAC GGTGTCGGCC GCGGCCAAGC ACTTCCCGGG CCACGGTGAC
GCCTCCGCCG ACAGTCACAT CGACCTACCG GTGATCGACC GCAGCGAAGA GGACTGGCGG
GCCAACGATC TCCCGCCGTT CGAACGGGCC GTCGAGGCGG GTATCGACGC CATCATGACC
GCCCACATCT CGGTGCCGAG CCTCGACGAC TCCGGTGACC CGGCGACGCT TTCCGAACCG
ATCATCACCG GACTGCTGCG CGAGGAGCTG GGTTACGACG GCGTGGTGGT CACGGACTCG
CTCGGCATGG CCGGCGTGCG GCAGATGTAC CCCGACTCCG AGATCCCGGT CCGGGCGTTG
GAGGCGGGTG TCGACCAGAT GCTCATGCCG CCGGACCTCG ACGCGGCCGT GAACGGTGTG
CTCGACGCGG TGGCCAGCGG CCGGATCACC GAGGAACGCA TCGACGAGAG CGTGCTGCGC
ATCCTGAAGC TGAAGTACGA GCGGGGCATC GTGTCCTCCC CGTTCGTCCC CGAGCACCGG
GCCGAACACG TGGTCGGCAC CAAGCGCAAC CGCGACACGG TGCAGCGCAT CACCGACGCC
ACGACCACCG TGCTCAGCGA TGATGCGAAG CTGCTGCCGC TGGACTCCGG CGTGCAGAAC
GTGCTCGTCA CCGGTTGGAA CCGGCCGGAC TACCCCGGTT ACGCCGCCGA ACCCGTCGAC
GACCTCGCGG ACGCGTTGTC GCAGCGCAGC GACGCGAACG TCACCAGCAT GCCCACCGGA
ACCAACCCGG ACCCGGCCAC CATCGACGAG GTCGTGGCCG CCTCCGACGA CGCCGACCTG
GTGATAGTGC TCACCAACGG CTTGCGGGGC AGCGAGGGAC AACGTGAGCT GGTTGAGCGG
CTGACCAGCA CCGACACCTC CGTGATCGCG GTCGCCGTTC AGGAGCCGTA CGACCCCGGC
TACGCGGAGG TTCCCACCTG GATCGCCACC TACGACTGGC GTGGCGTCAC CATGACCTCG
CTGGCCAAGG TGCTCGTCGG AGAGCACTCC CCCGAAGGGA CGCTGCCCGT CACGATCCCG
CACGGCGACG ACCCGGACCA GACCCTGTAC CCGTTCGGCC ACGGGCTGAC GTGGTGA
 
Protein sequence
MTTAKARPWK ACAAAALVGL LAVTTGSASA QPHSPSPSGD QQTQRHWGKR SWPERTLRAM 
TLEQKVGQLF VADVWGQSAD EAHPGNQEKY GVDTPAEVVR KYHVGGVIYF NHSGTDNIET
PRQVARLSNG LQRAALQSQP RVPLIVSVDQ EGGRVTRIAE HVTEYPSAMA LGASRDVEGA
RTAAAISAAE LRAMGINQNF APVADVNSNP LNPVIGSRSF SADPELAGEF VEAQVDGYQN
SRQPRQTVSA AAKHFPGHGD ASADSHIDLP VIDRSEEDWR ANDLPPFERA VEAGIDAIMT
AHISVPSLDD SGDPATLSEP IITGLLREEL GYDGVVVTDS LGMAGVRQMY PDSEIPVRAL
EAGVDQMLMP PDLDAAVNGV LDAVASGRIT EERIDESVLR ILKLKYERGI VSSPFVPEHR
AEHVVGTKRN RDTVQRITDA TTTVLSDDAK LLPLDSGVQN VLVTGWNRPD YPGYAAEPVD
DLADALSQRS DANVTSMPTG TNPDPATIDE VVAASDDADL VIVLTNGLRG SEGQRELVER
LTSTDTSVIA VAVQEPYDPG YAEVPTWIAT YDWRGVTMTS LAKVLVGEHS PEGTLPVTIP
HGDDPDQTLY PFGHGLTW