| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35810 |
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| Symbol | |
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| ID | 8388902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3900673 |
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| End bp | 3903438 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644977596 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003135363 |
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| Protein GI | 257057531 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.203227 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTGGAT CGACACGGAC GAAGAAAACG GGCACGAACG GTGACGGTCG CCGGAGATTG
GTGATCGTCG AGTCACCGAC CAAAGCCCGC AAGATCGCTC CGTATCTCGG GAGCGACTAC
GTCGTCGAAT CTTCCCGCGG CCATGTCCGT GATCTGCCCC GGGGAGCAGC TGACGTGCCC
GCGAAGTACA AAGGCCAGGC ATGGGCGCGG CTGGGTGTGG ACGTCGACAA CGACTTCGAG
CCGCTCTACA TCATCACGCC GGACAAGAAG GCGACGGTCA GTGAGCTGAA GAGCCTGCTG
AAGGACGTCG ACGAGCTGTA CCTGGCCACC GACCCGGACC GGGAGGGCGA GGCCATCGCG
TGGCACCTGT TGGAGGCGCT CAAGCCGAAG GTGCCGGTGC GCCGCATGGT GTTCCACGAG
GTGACCGAAC AAGCCATCCG CGCTGCCGCT GAGAACACTC GTGACCTCGA CCTCAACCTG
GTGGACGCCC AGGAGACCCG TCGCATCCTG GACCGGCTCT ACGGCTACGA GGTCTCCCCC
GTGCTGTGGA AGAAGGTCAT GCCGAAGTTG TCGGCGGGCC GTGTGCAGTC GGTCGCCACC
CGCATCATCG TCGAACGGGA ACGCGAGCGG ATGCGGTTCA CCTCGGCGTC TTACTGGGAC
ATCGCCGCCG TCATGGACGT CGGGGACGCG GACCCGGAGG CCACGCCGAG GTCGTTTCCC
GCGCGGCTGA CCATGGTGGA CGGCGCCCGG CTCGCGACGG GCCGGGACTT CGGCCCGGAC
GGTCGGCTCA AGGAGCAGTC GCAGGACGTG CGGGTGCTGG ACGAGGCCGA GGCGAACAGG
TTGGCGGAGG CGCTCGCCGA CCGTGAGTTC ACGGTCGTCA GCGTCGAGGA GAAGCCCTAC
ACGCGCAGGC CGTACGCGCC GTTCATGACG TCGACGTTGC AGCAGGAGGC CGGGCGCAAA
CTGCGGTTCT CCTCCGAACG CACGATGCGG GTCGCGCAGC GGCTGTACGA GAACGGCTAC
ATCACCTACA TGCGTACCGA CTCCACGACG TTGTCCGAGT CGGCGCTCGC GGCGGCGCGC
AGTCAGGCCA CCGAGCTGTA CGGGGCGGAG TACGTCGCGG ACAAGCCGCG TCAGTACACC
CGCAAGGTGA AAAACGCCCA GGAGGCTCAC GAGGCGATCC GCCCGGCCGG TGAGGTGTTC
CGCACTCCCG GTGCCGTGGC CGGTGAACTG GAAAGCGACG AGTTCCAGCT GTACGAGCTG
ATCTGGCAGC GCACCATCGC CTCGCAGATG GCCGACGCCA AGGGCACCAC GATGTCGGTG
AAGATCGCCG GCACCGCGGC GAGCGGTGAG GAATGTGTGT TCTCGGCTTC CGGCCGCACG
ATCACGTTCC CCGGCTTCTT GAAGGCCTAC GTCGAGTCGG TGGACACCGA GGCGGGTGGA
GAGGCCGACG ACAAGCAGAG CAGGCTGCCG CGGCTGGTCA AGGACCAGTC GTTGACGGCG
ACGGAGCTGC GCCCGGACTC CCACGCCACC TCGCCGCCGT CGAGGTACAG CGAGCCGAGT
CTGGTGAGCA AGCTGGAGGA GCTCGGTATC GGCAGGCCGT CCACGTACGC GTCGATCATC
AAGACCATCC AGGACCGCGG GTACGTGTGG AAGAAGGGCT CCGCGCTCGT GCCGTCGTGG
GTGGCGTTCT CGGTGGTCGG GCTCATGGAG CGGCATTTCG AACGGCTGGT GGACTACTAC
TTCACCGCCG CGATGGAGGA CGAGCTGGAC CGCATCGCCG CCGGCGAGGA GGAGCGCACC
GAGTGGTTGT CGCGGTTCTA CTTCGGTAAC GGCAAGGACG ACGACAGCTC CTCCATCGGC
AGTCTCGGCG GGTTGAAGAA ACTGGTCGGT TCCGGGGTGG AGGACATCGA CGCCCGCGAG
ATCAACTCGA TTCCGATGTT CCGGGACAAC GAGGGCCGCC AGGTCTATGT GCGGGTCGGG
CGGTACGGGC CGTACCTCGA ACGGGAGGTG GACGGCCAGT CGCAGCGTGC GAACCTGCCG
GAGGACCTGC CGCCGGACGA GCTCACGGTC GAGGTCGCGG AGAAGTTGTT CGCGACCCCG
CAGGAGGGCC GGGTGCTCGG TACCGACCCG GAGACGGGGC ACGAGATCGT GGTCAAGGAA
GGCCGGTTCG GGCCCTATGT CACGGAGGTG CTGCCCGAAC CGGAGGAGTC CGCCGACGGG
AAGAAGACGG GCAAGGCGAA GAAACCGAAG CCCCGGACGG CGTCGCTGTT CAAGTCGATG
TCGGTGGAGG ACGTCACGCT CGACGACGCG CTCAAGCTGT TGTCCCTGCC TCGAGTGGTG
GGCACCGATC CGGAGACCGG CGAGGAGATC ACCGCGCAGA ACGGCCGCTA CGGGCCCTAT
CTGAAGAAAG GTTCGGATTC GCGGTCGCTG TCCAGCGAGG AACAGATCTT CGAGATCACG
CTGGAGGAAG CGCTCAAGAT CTACGCAGAG CCGAAACGGC GGGGGCGGCA GGCCGCGGCC
AAGCCGCCGC TCAAGGAACT GGGTGAGGAC CCCGTGTCCG GTAAGCCCAT CGTGGTGAAG
GACGGGCGAT TCGGACCGTA TGTCACCGAC GGTGAGTACA ACGCCTCGTT GCGTAAGTCG
GACACCGTGG AAGATCTCAC CCCCGAACGT GCCGCCGAGC TGTTGGCCGA GAAACGGGCC
AAGGGGCCCG CGAAGAAGGG CACTGCTCGG AAGAAGACCG CTGCCGCGGC GAAGTCGAAG
GACTGA
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| Protein sequence | MAGSTRTKKT GTNGDGRRRL VIVESPTKAR KIAPYLGSDY VVESSRGHVR DLPRGAADVP
AKYKGQAWAR LGVDVDNDFE PLYIITPDKK ATVSELKSLL KDVDELYLAT DPDREGEAIA
WHLLEALKPK VPVRRMVFHE VTEQAIRAAA ENTRDLDLNL VDAQETRRIL DRLYGYEVSP
VLWKKVMPKL SAGRVQSVAT RIIVERERER MRFTSASYWD IAAVMDVGDA DPEATPRSFP
ARLTMVDGAR LATGRDFGPD GRLKEQSQDV RVLDEAEANR LAEALADREF TVVSVEEKPY
TRRPYAPFMT STLQQEAGRK LRFSSERTMR VAQRLYENGY ITYMRTDSTT LSESALAAAR
SQATELYGAE YVADKPRQYT RKVKNAQEAH EAIRPAGEVF RTPGAVAGEL ESDEFQLYEL
IWQRTIASQM ADAKGTTMSV KIAGTAASGE ECVFSASGRT ITFPGFLKAY VESVDTEAGG
EADDKQSRLP RLVKDQSLTA TELRPDSHAT SPPSRYSEPS LVSKLEELGI GRPSTYASII
KTIQDRGYVW KKGSALVPSW VAFSVVGLME RHFERLVDYY FTAAMEDELD RIAAGEEERT
EWLSRFYFGN GKDDDSSSIG SLGGLKKLVG SGVEDIDARE INSIPMFRDN EGRQVYVRVG
RYGPYLEREV DGQSQRANLP EDLPPDELTV EVAEKLFATP QEGRVLGTDP ETGHEIVVKE
GRFGPYVTEV LPEPEESADG KKTGKAKKPK PRTASLFKSM SVEDVTLDDA LKLLSLPRVV
GTDPETGEEI TAQNGRYGPY LKKGSDSRSL SSEEQIFEIT LEEALKIYAE PKRRGRQAAA
KPPLKELGED PVSGKPIVVK DGRFGPYVTD GEYNASLRKS DTVEDLTPER AAELLAEKRA
KGPAKKGTAR KKTAAAAKSK D
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