| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35200 |
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| Symbol | |
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| ID | 8388841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3823971 |
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| End bp | 3830219 |
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| Gene Length | 6249 bp |
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| Protein Length | 2082 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644977537 |
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| Product | helicase family protein with metal-binding cysteine cluster |
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| Protein accession | YP_003135305 |
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| Protein GI | 257057473 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCCTAC TGGGGGAGAA GCCGTTGATG TACCCGTCGT TGCTGGCGGA GGAGACCAAG
CAGGCAGTCA CCGAGTACCT GTCCACCACC TTCGCCCTGG CAGACGACGA CGCTCGTACG
GCGTTGGAAG CGTTCCTCAT GGCCCCGGAC ACCGGAATTT TCCGAGGCCC CTATCTGCGA
GTGCGGACCC CGTTCCACCC GGTGGGCCGC AAGTGGCGCT CCCCGCTGGA CTGGCTGCCG
GAAGGATTCA CTCCCTACCA ACACCAGGCG AAAGCGTTCG AGCGACTGTC CACCCGCGAC
GGTGCCGCCA AGCCGACCAT CGTCACCACG GGCACGGGCT CGGGTAAGAC CGAGTCGTTC
CTCTACCCGG TACTCGACCA CGCCGTACGC GCACGGGCTC GTGGTGAGAA GGGCATCAAG
GCTCTCTTGC TGTACCCGAT GAACGCGCTC GTCACCGACC AAGCCCGCCG CATCGCGGAG
CTGCTGCACG ACGATCCTCG GCTCAAGAGC GTCACGGCAG GCGTGTACAT CGGCGGCGAG
GGCAAACACA CCCAGCCGTC GCGTGAGCAT CTCGTGGACA GCCGAAGGGT GCTGCGGGAG
GACCCTCCGG ACATTCTGCT GACCAACTAC AAGATGCTCG ACCTGTTGCT GCTGCGCCCG
GCGGATGCGC CGCTGTGGGA GCAGTCGGCT GCGAGCCTGC AATACCTAGT CCTCGACGAG
TTCCACACCT ACGACGGCGC TCAGGGCACC GACGTCGCCA TGCTGTTGCG TCGCCTCGGC
GCAACACTGA AAGTCGCCGA ACCCGGTCGC CCGCTTGGCC GGATCACCCC CGTGGCCACC
TCGGCCACTC TCGGCGGTGC CACCCGGTCG GAAGAGTTGC GCAACTTCGC CGAGACCATC
TTCGGTACGT CGTTCCCGTC AGACGCCGTC ATCACCGAAA ACCGGCTGGA AGCGGCCGAT
GTGGTGCCGG ATGTCGACTT CAGCCTGACC ATCCCCGACG TAACGTCGAT CAATCAGTTT
GATCCTCCCG ACGCGACTCG CTCCGATTCT TGGCAGGAGC TTGCACATGC CTTTCTCGGA
GGAGCCATCC CCGACCGGCT CGCGCTCGGG AGGCGCCTCA GCCGCAGCTT CCTCACCCGG
GCCGTGGTGC AGGCACTCGC GGACGAGCCC CTGACGCTGC CCCAGGCCGT GGATGCGGTC
ACCAACTCCG GTGTGTTGCA GTGGGGGGTT GCCAGGGAAC GGGACCCGAA AGGGGTCGAG
AACGCACTCC TGCGCTTCCT TGCGCTGCTG TCCGCCGCCA GGATCGGCGG TGGTCGAGGG
CGGACCCGGC CGCTCGTGAA CGTCGAAGTG CAGCTTTGGA TCCGCGAACT CACGCGAATG
CTGCGCGCCG TCAAATCCGA ACCGCAGTTC GGTTGGTGGC ATGACGGCCC CACAGACCAC
GACGTGCGCT ACCTGCCTGC CGCCTACTGT CGCGTGTGTG GTCGATCGGG ATGGCAGACG
GTGGCCACCG AACTCGGCGA AGAGCTGGAA GGCTCCCCGG AGAAAGTCTG GCGAACGAGT
GTGACCGATC GCCGGAAGCT GCGCACGCTC TTGCTCGCCC GTGACGATGA ACCCGATGCC
CGACGCATCG ATCCCCGGAC ACTCGCATAC TCCCGTGACG GCGAGCCGGG ACTGTCCGTG
CTCGTGACCC CCGATGAGGA GGCTGCCACC GAGCAACGGT GTCCGTCTTG CGGTGCCGAC
GACGCCGTCC GATTCCTCGG CTCGTCGGTG GCGACTTTGG TCAGCGTGGC CCTCACCCAG
CTTTTCGGCT CCAACCTCAT CAGCCATGGG GAGAAGAAGA CCCTGGTCTT CACCGACTCG
GTGCAGGATG CCGCCCACCG GGCGGCGTTC ATCGAAGGCA GGGCCTTCCA ATTCAACCTA
CGTTCGGCGT TGTTGCGTGC GGTCGGAGAC CGACCACGCA GCCTGCAGGA CGTGACCACG
GCCCTGGCCG CAAGCCCCAC CGAGGACCTC TACGCCATCG CCCCTCCGGA CTTCACGCGC
AGGCTCGGCT TCGAGGGCGA GTGGCTCGAC CGGGACAGGG GCGGTCGCAG ACGGCGGTTG
CTCGGAACTC GACTGACCTT CCAAGCGCAC CTCGAAATCG GTCTACGGTC CCGACTCGGT
CGGACACTGG AACTCACCGG TGCCCTCGCC GTCGACTACG ACATGGACCT GGGTCGGTAC
GCAACCTTGG CCCGCGACGC CCACGAGAAC CTGCCCGAAC GCGGTATGAG CCTGCCCGAC
CGGGAAGCGT ACGAGGTCTG GCTGCTGGGA TTGCTCGACC GGCTGCGAAA GCGGGGCGGG
ATCGCGCACC AGTGGCTCGA CGCGTATGTG CAGCGGGACG GCAATCGATG GCCGATCTGG
GGTGGAAGTC CCGCGGGGAT GCAGAAGTTC CCCCGCGGGC GGCCCGCACC CGTCTTCTAC
AGCACGTCGA CCAGTGGCGA CTTCGACAGT CTTCGTCCCC GCGGCGAGTC GTGGCTGGTG
GACTGGACGG AACGGTGTTT GGAAGTCGGC CGGGCCGAGG CTCGCGCTCT TCTCGAGCCC
GTGGTCCGAT TGCTGGCCGA GGGCGAGACT CCACCGCTGC TGCGCCGCAC GTCCCAAACG
GATGCCGCAG TGTTCGGACT CGATCCGGCC CGGATCGAGC TGATCCCGTT GAACAACAGC
GAGCTGGAGC ATGCCCACCT GAGGTGCCCG AAATGCCACC ACATCCAGCC CGTTGCGCCG
AAGCGGTTCG ACCGGTGGCT GTCAGCGCCG TGCCCCAGAA TGCGCTGCAC CGGACACCTG
GAGCCGCATC GAGTACGGGA AGACAACTTC TATCGCAGGC TTTACCGCTC CGGGCGCCTG
CGACACCTCG TGAGTCACGA ACACACGGCG CTTCTGGACG ACGATACGCG GCTCGAAGTC
GAACGCCGCT TCTCCAACGG TTCCTCACCG ATAGACCCGA ACGTGCTGAC GTGCACGCCG
ACGTTGGAAC TGGGTATCGA CATCGGTGAC CTGTCGACTG TCGGGCTGGC CTCCCTACCA
CCGACTCCGG CTAACTACCT CCAACGGGTC GGCCGGGCGG GCAGGTCCAC CGGCAACGCA
CTGGTGCTCG CGACGGTACC GAGCAGTCCA CGAGAGCTGT ACTACCTGTC GGAGCCGAAG
CACCTCATCG ACGGCGAGGT CATTCCACCG GCGGCCTACC TGTCGGCCAC CGAGCTGTTG
TGTCGGCAAT ACCTGGCGTA TTGCTTCGAC CGGGTCGCTT CCGGTGACAT TCGGCTCGAC
CGTGAGATGC CGCGCCTGCT CGGTGCCTTG CTCGACAACG GGCTGGCCGA GGGAAGTTGG
CTGCGGCAGT TCGTCGACAC GGTGACCAAG AACGCCCACG TGCTGGCCGA GCAGTTCCTC
TCCCTCTACG GCGACGCCAT CGACGAGGAG GTCCGCCGAG CGGTGCGGTC CTTCGCCGCC
AAAGGGCTGC GCGACAAGCT CGCCCGTGTG GTGTTCCAAT GGGCGGACCA GAGAAAGGAA
CTGGAATACC GGCAGGGTGA GCTCGCCACG GCGATCGATA GTCTCGAGAC CCAGAAGCAT
CTCGACGACA CCCAGGTCGA GGACCGTCGA CGCTGGATCG GTGAGTACAG GGCACTCACC
CACATGTTGC GCGATACGTG GAACCGCAAC GCGTTGACCG GGCTCGGTGA GTTGTCCCTC
CTGCCGAGCT ACAACTTGCT CGACGAGCAC ACCGAACTCG ACGTGTCGCT GTGGTGGACC
ACCGACGACG AGGGCGAGAA GAAATTCCAC ACCAGCGAAC ACAGCTACGG GCGCGGCAGC
CGTACTGCTC TCACGGAATT TGCCCCCGGC GCGGTCTTCT ATGCCCAGGG ATACCGAGTG
GAGATCGATG CTTTGGAGCT CGGGCCCTCC GGACAGCCTC ATTGGCGGCA CATGCGGTTG
TGCCCGGACT GCGGATGGGG AACCGAGACC GTCGATCCGG CTCCCCCCGC GTGCCCGCGG
TGCCGCAGCA CCGGTGTTGC CGATGCGGGC GCTGTTCACA AGGTGCTCGA ATTACGAAAG
GCCTCCGCGG TTCACCGTCG TGACGAGGCC CTGATCGAAG ACGAGACCGA GGACCGGACC
CGCACCCGAT TCATCACGGT CACCGGCGTG GATGTGGATT ACGACCAGAT CCAAGGTGCC
TGGCGGCTCA GGGGGCAAGC CTTCGGTGCC GAATACATTC GGCAGGCGAC CATCCGCACG
GTCAACCTCG GGCGTGCCGA CCGGCCCGGC CCCGATATCT CCGTGGCGGG AACTCATACC
TCGGCCCCAC GCTTCCCGAG TTGTGTGTAC TGCGGAGTTG TCCGCCAGAG CGCTGAGGAC
AAGGTGCGGC ATCGCGGGTG GTGCTCGACA CGGCGGGGAA CCGCGCCACG CTGGGTTGAC
CTACTGCTTT CCCACGAGAT CACCACTCAG GCCGTGCGGT TGCTGCTGCC GGTGTCCACC
TTCCAGGTCA ACCTGCGTCT CGTCTCCCTG AAGACCGCCC TCCTTTTGGG GCTGCACCAG
GATTTCGGCG GAGCACCTCA GCACCTCGAC ATCGTCACGG CGCGTATGCC CGACGAGCAT
CGCCGGGTCA GACAGTTCTT GGTGTTGCAT GACACGGTGC CCGGCGGCAC CGGCTACCTC
GATCGCTTCG GCGACCCCAA CCGAATGCGT CGCATCCTGC AACAGGCCTA CGAGGTGCTC
AGCTCCTGCC AGTGCCAGTT CGAAGAGCGT GCCGCCTGCC ACCGCTGCTT GCTCAGAGTC
GCCGAACCGG GAGAAGTGGA GCACGCCAAC CGCCGGGTGG CGATGGAGCT ACTGGCCGAA
CTCCTCGACA ACTGGTCGGT GGAAGGCATT CCTACCGTTG CCGACATCGA CATCTCCTCC
CTCCAGCTCT CTGAGCTGGA ACTCCGGTTC CGGGAGGTGC TCAAGAGCGC GGTGAGCCGG
GGAGAAGGAC AGTCCTGGAC GAGTTCGACC GGGCAGCGGG GTGAAGAACT CGACATCCAT
CTGCTCAGCC CGAACCAGGA GCCACGCCGG TGGACCGTGC GTCCTCTGGT GCGCGTGACC
GCCGGCAAGG TCATCACAGA ACCCGACTTT CTCTTCACGC GGCAGGATGC TCAGGACGCA
CCTGTTGCGG TCTATCTCGA CGGCCGGGCT TATCACGCCT CGGTGGAAAA CGACCGCACC
GCGGACGACG CCGTCAAGCG TACGGCGCTG CGAGACGCGG GATATCGGGT GTGGTCTTTG
ACTTTCCAGG ATGTCGAAGA CTTCGCACGG ATGCTCGACG GCTACGACAG CATGTTGCCT
ACTTTGGTCG ACAGCAAGGC CGCCAATGCC GCACGGGCCG CTGTCGGTGA CAGGCGTGCC
TCGCTGCTCT GGGGGAACCC GATGCGAGCG TTGCTCGAGT ATCTTCGCGA TCCCGGCGAG
GCGGTGTGGG GCCAGACGGC GGTGCAGACC TGTATCGCCC TCATGAGTTC GAACGACCAC
CGTGGGCATC CGCCGACGCA AGTGGTTCCG GAGGAACTGC CTTCCACACT GCTGGCTTGG
GCTCGGGGCG AGCGTCCCGA CGGGCGTGGT GGTGCGGTCG TAGTGGCGTC TTGTGTCGGG
ATGTCGGGCC TTCCGATCGG TATTGTCGGT AGCTCGCACG GAGCGGGGAC CGACACCATC
GGGGCCGTGA CCGTGTTGGA CGACCGGCCC AGTGAAGTGG GCGGCCGATC CCACGAACAG
CAGTGGCGAG ACTGGCTCAG CTGGTCGAAC GTGCTCCAGT TCCTCCCACT TCCCACGTAT
GGATCTGCCA TGCCGATGCG GATGGCCGAG TGTTGGACCC GGAGTTCACT TGACGTCTTT
GCGGGCAGGT TCCTGCCCCT GGCCCGGCCG TCCACTGTGG AGAGAGAAGC GACAGTGGAT
GTCGTTCCTG CCCGGTGGGA AATCGTCATC GAATTCACTC ATGAACGCCT CGCTCGAATC
GGAAAGCGGT TGGCGGAACT CGACATACCG GAGCCCGAGC CCGGCGGTGA GGTCGGTGAT
CCCAAGGGAG ATTTGTGGCC GGTGGAGTAC TGCTGGCCCG ATCGGAAGTT CGCAGCAGTC
ATCGACGTCT GTGACAACAG GGACCAATGG CTACGCCGTA ACGGGTGGCA GGCCTGGTTG
TTCGAGGAAG GCGACGACGA GGAGGAACTT GTGAACAAGA TCGCGGCAGC GTTCGGAAAG
CAGGTCTGA
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| Protein sequence | MVLLGEKPLM YPSLLAEETK QAVTEYLSTT FALADDDART ALEAFLMAPD TGIFRGPYLR
VRTPFHPVGR KWRSPLDWLP EGFTPYQHQA KAFERLSTRD GAAKPTIVTT GTGSGKTESF
LYPVLDHAVR ARARGEKGIK ALLLYPMNAL VTDQARRIAE LLHDDPRLKS VTAGVYIGGE
GKHTQPSREH LVDSRRVLRE DPPDILLTNY KMLDLLLLRP ADAPLWEQSA ASLQYLVLDE
FHTYDGAQGT DVAMLLRRLG ATLKVAEPGR PLGRITPVAT SATLGGATRS EELRNFAETI
FGTSFPSDAV ITENRLEAAD VVPDVDFSLT IPDVTSINQF DPPDATRSDS WQELAHAFLG
GAIPDRLALG RRLSRSFLTR AVVQALADEP LTLPQAVDAV TNSGVLQWGV ARERDPKGVE
NALLRFLALL SAARIGGGRG RTRPLVNVEV QLWIRELTRM LRAVKSEPQF GWWHDGPTDH
DVRYLPAAYC RVCGRSGWQT VATELGEELE GSPEKVWRTS VTDRRKLRTL LLARDDEPDA
RRIDPRTLAY SRDGEPGLSV LVTPDEEAAT EQRCPSCGAD DAVRFLGSSV ATLVSVALTQ
LFGSNLISHG EKKTLVFTDS VQDAAHRAAF IEGRAFQFNL RSALLRAVGD RPRSLQDVTT
ALAASPTEDL YAIAPPDFTR RLGFEGEWLD RDRGGRRRRL LGTRLTFQAH LEIGLRSRLG
RTLELTGALA VDYDMDLGRY ATLARDAHEN LPERGMSLPD REAYEVWLLG LLDRLRKRGG
IAHQWLDAYV QRDGNRWPIW GGSPAGMQKF PRGRPAPVFY STSTSGDFDS LRPRGESWLV
DWTERCLEVG RAEARALLEP VVRLLAEGET PPLLRRTSQT DAAVFGLDPA RIELIPLNNS
ELEHAHLRCP KCHHIQPVAP KRFDRWLSAP CPRMRCTGHL EPHRVREDNF YRRLYRSGRL
RHLVSHEHTA LLDDDTRLEV ERRFSNGSSP IDPNVLTCTP TLELGIDIGD LSTVGLASLP
PTPANYLQRV GRAGRSTGNA LVLATVPSSP RELYYLSEPK HLIDGEVIPP AAYLSATELL
CRQYLAYCFD RVASGDIRLD REMPRLLGAL LDNGLAEGSW LRQFVDTVTK NAHVLAEQFL
SLYGDAIDEE VRRAVRSFAA KGLRDKLARV VFQWADQRKE LEYRQGELAT AIDSLETQKH
LDDTQVEDRR RWIGEYRALT HMLRDTWNRN ALTGLGELSL LPSYNLLDEH TELDVSLWWT
TDDEGEKKFH TSEHSYGRGS RTALTEFAPG AVFYAQGYRV EIDALELGPS GQPHWRHMRL
CPDCGWGTET VDPAPPACPR CRSTGVADAG AVHKVLELRK ASAVHRRDEA LIEDETEDRT
RTRFITVTGV DVDYDQIQGA WRLRGQAFGA EYIRQATIRT VNLGRADRPG PDISVAGTHT
SAPRFPSCVY CGVVRQSAED KVRHRGWCST RRGTAPRWVD LLLSHEITTQ AVRLLLPVST
FQVNLRLVSL KTALLLGLHQ DFGGAPQHLD IVTARMPDEH RRVRQFLVLH DTVPGGTGYL
DRFGDPNRMR RILQQAYEVL SSCQCQFEER AACHRCLLRV AEPGEVEHAN RRVAMELLAE
LLDNWSVEGI PTVADIDISS LQLSELELRF REVLKSAVSR GEGQSWTSST GQRGEELDIH
LLSPNQEPRR WTVRPLVRVT AGKVITEPDF LFTRQDAQDA PVAVYLDGRA YHASVENDRT
ADDAVKRTAL RDAGYRVWSL TFQDVEDFAR MLDGYDSMLP TLVDSKAANA ARAAVGDRRA
SLLWGNPMRA LLEYLRDPGE AVWGQTAVQT CIALMSSNDH RGHPPTQVVP EELPSTLLAW
ARGERPDGRG GAVVVASCVG MSGLPIGIVG SSHGAGTDTI GAVTVLDDRP SEVGGRSHEQ
QWRDWLSWSN VLQFLPLPTY GSAMPMRMAE CWTRSSLDVF AGRFLPLARP STVEREATVD
VVPARWEIVI EFTHERLARI GKRLAELDIP EPEPGGEVGD PKGDLWPVEY CWPDRKFAAV
IDVCDNRDQW LRRNGWQAWL FEEGDDEEEL VNKIAAAFGK QV
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