| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35050 |
|---|
| Symbol | |
|---|
| ID | 8388827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3807116 |
|---|
| End bp | 3808573 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644977525 |
|---|
| Product | trehalose 6-phosphate synthase |
|---|
| Protein accession | YP_003135293 |
|---|
| Protein GI | 257057461 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCT CGGAGCACGC GCCCTCGCCC CGGTCGAACG CGAAAGCCGA GTTCGTGGTC
GTTGCCAACC GTTTGCCGGT CGACCTCGAG CGGTCGGAGG ACGGAACCCA GCGCTGGACG
CAGAGCCCCG GTGGGCTCGT GTCCGCGCTG GAGCCGTTCC TGCGGTCCCG TAAGGGAGCC
TGGGTCGGCT GGCCGGGTGT GCCCGACGTC GAGGTCGAGG AGTTCAGCGA CGACGGACTC
ATCCTGCATC CCGTGTCGCT GACCTCCGAC GACGTACGCG AGTACTACGA AGGTTTCTCC
AACGCCACGT TGTGGCCGCT GTACCACGAC GTGGTGGCAC GACCGGTGTT CGACCGGGGT
TGGTGGGACA GCTACGTGCG GGTCAACCGA CGGTTCGCCG AGGCCAGCGC CGCCGTGGCC
CGCGAAGGCG CCACCGTGTG GGTACAGGAC TACCAGCTTC AGCTGGTGCC GACGATGTTG
CGAGAGCTGC GTCCCGACCT GCGCATCGGC TTCTTCCTGC ACATCCCGTT CCCGCCCGTG
GAGCTGTTCA TGCAGTTGCC GTGGCGTGCG GAGATCGTGC GGGGGCTCAT CGGGGCCGAC
CTGGTGGGGT TCCACCGCCC CGGTGGCGCA CAGAACTTCC TGTGGCTGGC CCGGCAGTTG
ATCGGCCTCG AACCCAGCCG CGGTTCGGTG GGGGTGCGGT CCAGGCCCGG CATGGTGCAG
GTCGGCGACC GCACCGTGCG GGTGGGCGCG TTCCCCATCT CCATCGACGC CGCCGGCCTG
GATGCGCTGG CTCGCAGCAA GCCCGTGCAG GAACGCGCCG CCCAGGTGCG GCGTGAACTG
GGCGACCCCA AGACGATCCT GCTCGGTGTC GACCGCCTCG ACTACACCAA GGGCATCGAC
CTACGCCTGC AGGCGTTCCA CGAACTGTTG CAGGAAGGAC GGGTCCAGCC CGAGGACGTC
ACGTTCATCC AACTCGCGAC CCCCAGCCGC GAACGCGTCG AGCACTACCA GGAGATGCGT
AGCGAGATCG AGCAGATGGT GGGTCGCATC AACGGTGAGT TCGGCCGGGT CGGCCATCCC
GCCGTGCATT ACCTGCATCA ATCGGTGGAC CGCTCGGAAC TCGCCGCTTT CTTCTCCGCC
GCCGATGTCA TGGTGGTGAC CCCCTTGCGG GACGGGATGA ACCTCGTGTG CAAGGAATAC
GTGGCGTGCC GACACGATCT CGGCGGTGCC CTCGTGCTGT CCGAGTTCGC GGGAGCCGCG
GCCGAGCTGA GCAGCGCTTT CCTCGTCAAC CCCCATGACC TGGACGGGGT GAAGAACGCA
CTCGAACAGG CTATTACGCT CGACCCTGCG GAAGGCCGGC GTAGGATGCG CGCCCTGCGT
CGTCAAGTCC TGACGCACGA TGTCGATAGG TGGGCGCGCT CGTTCCTCGA GGCCCTCGGG
ACCGAAGTGT CCGCCTGA
|
|---|
| Protein sequence | MPSSEHAPSP RSNAKAEFVV VANRLPVDLE RSEDGTQRWT QSPGGLVSAL EPFLRSRKGA
WVGWPGVPDV EVEEFSDDGL ILHPVSLTSD DVREYYEGFS NATLWPLYHD VVARPVFDRG
WWDSYVRVNR RFAEASAAVA REGATVWVQD YQLQLVPTML RELRPDLRIG FFLHIPFPPV
ELFMQLPWRA EIVRGLIGAD LVGFHRPGGA QNFLWLARQL IGLEPSRGSV GVRSRPGMVQ
VGDRTVRVGA FPISIDAAGL DALARSKPVQ ERAAQVRREL GDPKTILLGV DRLDYTKGID
LRLQAFHELL QEGRVQPEDV TFIQLATPSR ERVEHYQEMR SEIEQMVGRI NGEFGRVGHP
AVHYLHQSVD RSELAAFFSA ADVMVVTPLR DGMNLVCKEY VACRHDLGGA LVLSEFAGAA
AELSSAFLVN PHDLDGVKNA LEQAITLDPA EGRRRMRALR RQVLTHDVDR WARSFLEALG
TEVSA
|
|---|
| |