| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_34940 |
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| Symbol | |
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| ID | 8388816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 3795364 |
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| End bp | 3796977 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644977514 |
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| Product | fused histidine kinase with GAF domain/SpoIIE-like protein |
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| Protein accession | YP_003135283 |
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| Protein GI | 257057451 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.24735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.897834 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGGG CGGTCGACAC CCACCACACC GAAGACCGTC TGCGTCGGTT CGAGGCGATC
GCCGACACAG GACTGGCTCA TCTGCGCGAG GAAGACGTGC TCAAGGAGTT GCTGGACAGG
GTCCGGGACG TGCTCGAAGC CGACACAGCG ACGGTCCTCC TGCTCGACAA CACCGGACAG
CAGCTTGTCG CCGCCGCCTC CTCCGGTCTG GAGGAGGAGG TGCGACAGGG TGTGCGGGTG
CGTGTGGGTG AGGGCTTCGC CGGTCGGGTC GCCACCGAGC TGAAACCGTA CGCCATCGAG
GACGTCAACT CCGAGACCGT CGTGAACCCT CTGCTGTGGC GGAAGGGACT GCGGGGACTC
GTCGGTGTCC CACTGCTCGC GGAAGGTGAG TTGCTGGGCA TCCTGCACGT CGGCACCCTG
CGCAAACGGG TCTTCGACGA CGAGGAGATC CACTGGCTGC ACCTGGTCGC CGACCGAATC
GCGGTCAGCC TGCGCAGCCA GTTGACGTCC AGCGACCGGA ACGCGGCCGC GACGCTGCAA
CGGTCGTTGC TGCCCGTGCA GCTACCGTCC ATCTCCGGAC TCGACCTGGC CTCTCGATAC
GTGCCGGGAG AACGCCTCGG CACCAGCGGT GATTGGTACG ACGTGTTCAC CCTGCCCTCA
GGGCGGGTGT GCATGGTGAT CGGGGACGTG GTGGGGCGTG GCCTGTCCGC CGCCATGATC
ATGGGTCGCC TCCGCACGAT CCTCCGGGCG TCCTCCCTCG ACCGTGAGGA CCCCAGTGAG
ATCCTGACGA AACTCGACCG ATACGCCCGC CACTTCGAAT CCGACATCAT GGCGACGATC
GCCTGCGGCG TGTGGGAACC GTCGCTGGAA CGGGTCCACC TGTCGCTGGC GGGACATCTC
ACCCCGGTGT TCGCCCCCGT GGGGGAGGAG AGCCGCTTGG TGACCGAGGT GCCCGTCGAC
GCGCCCATCG GGGTCAGTTC GACGACGCAG AAGCGACACA CGGTCACGGT GGAGGTGCCC
TACGGAGCGG CTCTGCTCTT CTACACCGAC GGACTCGTGG AACGACGGGA CCGCCCATTG
GACGACGGTC TGCGTCAGCT GTGCGAAACC GTCCGCGCCG GCCCGGCAGA GACATTGTGC
GCGGAAGTGA TGAGCAAACT GGTGGGAGTC AATTCCCCCA GTGACGACAT CGCCATCCTG
GCGGCTCATC GGCAAGCTCC CGAAACACCC TCCGAGTTGC GGTTCGAGGT CGACGCCACG
CCCGAATCAC TGGCCGAGGT GCGTTCGCAG CTGAGGCGCT GGTTGCCGAA CGTGGGGGCA
TCCGAGGACG ACACGGCGGA CCTGCTCATC GCCGTGGGTG AGGCCGTGGC CAACTCGATC
GAACACGCTT ACGGCCCCCA CGGCGGTAAG GTCGCCCTGG GGCTTGAGGT GCACGACGCG
GAAGTGGAGA TCACCGTAAG CGACACGGGC ACGTGGCGCT CGCCCAGGGG CACCCATCGC
GGGAGGGGAA TGCAGCTCAT GCGGCAACTC TGTGACGAGC TCACCGTGGA GCACGACGAG
ACGGGCACCC ACGTCCGGCT GCGCAAACGA TTCTCGGAGG ATGAGTCCGC ATGA
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| Protein sequence | MPRAVDTHHT EDRLRRFEAI ADTGLAHLRE EDVLKELLDR VRDVLEADTA TVLLLDNTGQ
QLVAAASSGL EEEVRQGVRV RVGEGFAGRV ATELKPYAIE DVNSETVVNP LLWRKGLRGL
VGVPLLAEGE LLGILHVGTL RKRVFDDEEI HWLHLVADRI AVSLRSQLTS SDRNAAATLQ
RSLLPVQLPS ISGLDLASRY VPGERLGTSG DWYDVFTLPS GRVCMVIGDV VGRGLSAAMI
MGRLRTILRA SSLDREDPSE ILTKLDRYAR HFESDIMATI ACGVWEPSLE RVHLSLAGHL
TPVFAPVGEE SRLVTEVPVD APIGVSSTTQ KRHTVTVEVP YGAALLFYTD GLVERRDRPL
DDGLRQLCET VRAGPAETLC AEVMSKLVGV NSPSDDIAIL AAHRQAPETP SELRFEVDAT
PESLAEVRSQ LRRWLPNVGA SEDDTADLLI AVGEAVANSI EHAYGPHGGK VALGLEVHDA
EVEITVSDTG TWRSPRGTHR GRGMQLMRQL CDELTVEHDE TGTHVRLRKR FSEDESA
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