| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_34600 |
|---|
| Symbol | |
|---|
| ID | 8388783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3764896 |
|---|
| End bp | 3767586 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644977481 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_003135250 |
|---|
| Protein GI | 257057418 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.240739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGTCTTG GAGAAGCTCG TTTCCACAAA GAGTGGTTAC TTCCGGGCGC AGTGGCGGTG
GGCGCGGCCG CAGCCATGAC AGGCGACCTG GTTTTCGGCA TTCTCCCCGA CGAATGGGCG
GTCGTGGGGT GGACGAGCGC CGCCGTGCTG GTCGGTGGAC TCACGTTCAC AGTGCAGCGG
TATTACAACA AAACGCGCAC TGTAGCGGCG ATCAACACTC CCTCCATCGA TCATCTTCCG
CCCGCACACG ATCTCGTAGC GAGAAGCGTG CTGAGCCGGG CCCTGCTTCA AGAATTGGCT
GACGTCCGAT CACCCAGAGG GCTACTACCC AATACGCCGT CTGAGCACCA AGGACAGGCC
ACCGTGGTGG TCGTGCACGG GGCCGCGGGA ATCGGCAAAA CAACCCTGGC CCTACACACC
GCGCATCGGG TGAAGAAAAA CTATCCCGAC GCCCGGTTGT ACATCGACCT GCGGGGCGAC
GGCGATTCGC CGAGAACCAG TGCACAAGCC CTCGAGTGGT TTCTTCGTAG CCTCGGTGTG
GCCCCGACCG AGATCCCACG CCGCACAGGC GACCGTGCCA GTCTCTTCCG TAGCCTCACA
AACCCGCTCA GGGCTTTGAT CGTCCTCGAC AACGCGTACT CGACAGAACA AATCCTGCCA
CTCATTCCCT CGGGCCCCGG CTGCGCTGTA CTGATCACCA GCCGACGGGC CCTGTCCGTC
GGAAACATCT CGCGCCACCG GATGGTCCGG GTGGAGTTAC CGCAGGAGGA CGAAGCACTG
ACCATCCTGG CCCACTACGC AGGCGAAGAG CGCATCGCGG AGGACCCCGC CGTCGCACTG
GAGCTCGTGC AGTTCTGTGG CCGGCTACCG CTCGCGCTGC GGATCGTCGG TGCTCGGCTA
CGAGCACGTC CCGACCTGAC GCTCCGCCAT ATGCGGGCTC GGCTGACGAG TGAGCGGTCC
CGACTCAGAG AACTCGTCTA CGACAACGAG AGTCTGCAAG CATGCCTGCT GCTCAGTTAC
CGGGAGCTCA CGAGGGAAGC ACAACAGTCA CTCGGCCTCC TCGGCCACTT ACCGGCAGGG
CGACTCACCA ATTGGCACGT CACGGCATCC GGCCTTCCGG AGGAGACGGC GCTGCCCGTC
GCGGACGAAC TGGTTGAGAC GTGCATGATG CAGTCAGTAA GCGGCGATGA CACCGGGCCG
CAATACTCGA TCCACGACCT CGTACGAGTT TTCGCCTCCG CGCAATACGA GCAACTCCCA
CTCGATGAAC GCCGGAAACT CGAACGTCGG CTGATCGAGG CATACAAGGA CGCCGTTTTG
AGCCTGGCCG CCTCCCGAGC CCCCGAACTC GCCGCCCAGG AGGCCGTGAC ACCGTCAGAC
CGGCTGGACG GCCTACCGGC AGCGGAATGG GTCGCGCTCG AGTCCGATCG GCTGGTCTGG
GCCTGTGAGC GAGCACGGGA ACTCGGACTC CCTCGCACGG CCTCGCTGAT CGCCGAGTCC
GCCTCGTACT TCCTCGAGGA CTTGAACCTC ACCCCCGAGA CAGTGGAAAC CCTGCTGGAC
CACGACCAGC CGGAGCGGCC GCGAACGATG CAGGCACTGG TCCGCGCTCG GGCGTCATTG
CGAGTCGCGG CCCATGACCC CGAAACCGCT TTGACACTGT TGTCCTCAAC CCCGGCCGAC
GCCGACGAGT ACTCGGCGGC ACGCCACAAA GCGGACCTCG CTCGTGTCCA CCTGGTGAAC
AGCGACTTCC CCCAGGCACG GGCTCATATG ACCGAGGCCG TACACGCCCT GCGCGAGTTA
AACGACGTAT GGCACTTACT CGTGTCCTTG GAGAAACTCG GCGAGATCCT CCGAGCGCAA
GGCAGGCCAG CGGAGGCGGA GACGTGCCAG CGTGAGGCGC TTGACATGGC ACGTCGTTTC
GGGGATCTCA GAGCCACCGC GCGGCTTCGC AGATCCCTCG CCGAAACATT GGGTTATCTC
CGGGAATTGA CCGAAGCGCA GGAACACCTC CAAGCCGCGT TGGCGGACTT CCGCAGACTG
CGTGACCGCC GGTGGGAGGC CGCGACGCTG TACGCGCTGG GGAAGATATA CCGGCTACAG
GCCAAACGGG ACCTCGCCCT TGAATGCTAT GCACATGCAC TCCGCATCTT CGAGCCCATG
GGAGAACGAC TGTGGGTCGG GCGAATCCAC AACGCGCGGA TCAGGGTCCT CGCCGGTATG
GGACGGCTAC GTCGCGCTCA GCAGGAGGCA GAACGAGCGC TTTCAATTTT CGAGGAGCTA
GGACACACCC TGTGGTACTC CCACACGCTG CGAGACGTCG GATGGCTCCA AATACGGACC
GGTTCACCGG AGAAGGCGAT ACCGCCTTTG ACTAAAGCGA TCGAACGGAC ACGACAAGCG
GGCGATGCGT ACGCGGAAGC CATGGCACGA CACTTGCGGG GCATCGCATA CCGTGAGACC
AACCGTTTCG CCGAAGCGCG GCAGGAGTTC GGCCGAGCAC TCGAGATCTA CCGCACAGGA
AGATACACGT GGACCGAAGC CGCCTGCGCC CACGACTTCA TCCGCGCTTT ACGTGCTGAG
GGCGCACACG ACGAGGCCGA CCGTGTCGAG TCGACTCTCA AGACGAGCAA TCCTTTGTTC
GAGCGCATGG CAGGACGCAA CGGGGCGGTG GCGATACCGG ACGAGGACTG A
|
|---|
| Protein sequence | MGLGEARFHK EWLLPGAVAV GAAAAMTGDL VFGILPDEWA VVGWTSAAVL VGGLTFTVQR
YYNKTRTVAA INTPSIDHLP PAHDLVARSV LSRALLQELA DVRSPRGLLP NTPSEHQGQA
TVVVVHGAAG IGKTTLALHT AHRVKKNYPD ARLYIDLRGD GDSPRTSAQA LEWFLRSLGV
APTEIPRRTG DRASLFRSLT NPLRALIVLD NAYSTEQILP LIPSGPGCAV LITSRRALSV
GNISRHRMVR VELPQEDEAL TILAHYAGEE RIAEDPAVAL ELVQFCGRLP LALRIVGARL
RARPDLTLRH MRARLTSERS RLRELVYDNE SLQACLLLSY RELTREAQQS LGLLGHLPAG
RLTNWHVTAS GLPEETALPV ADELVETCMM QSVSGDDTGP QYSIHDLVRV FASAQYEQLP
LDERRKLERR LIEAYKDAVL SLAASRAPEL AAQEAVTPSD RLDGLPAAEW VALESDRLVW
ACERARELGL PRTASLIAES ASYFLEDLNL TPETVETLLD HDQPERPRTM QALVRARASL
RVAAHDPETA LTLLSSTPAD ADEYSAARHK ADLARVHLVN SDFPQARAHM TEAVHALREL
NDVWHLLVSL EKLGEILRAQ GRPAEAETCQ REALDMARRF GDLRATARLR RSLAETLGYL
RELTEAQEHL QAALADFRRL RDRRWEAATL YALGKIYRLQ AKRDLALECY AHALRIFEPM
GERLWVGRIH NARIRVLAGM GRLRRAQQEA ERALSIFEEL GHTLWYSHTL RDVGWLQIRT
GSPEKAIPPL TKAIERTRQA GDAYAEAMAR HLRGIAYRET NRFAEARQEF GRALEIYRTG
RYTWTEAACA HDFIRALRAE GAHDEADRVE STLKTSNPLF ERMAGRNGAV AIPDED
|
|---|
| |