| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_34520 |
|---|
| Symbol | |
|---|
| ID | 8388776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3756997 |
|---|
| End bp | 3759240 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644977474 |
|---|
| Product | AAA+ family ATPase |
|---|
| Protein accession | YP_003135243 |
|---|
| Protein GI | 257057411 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0185945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACATCAC CACGGCTGTC GCTGACCGTT CGACACACCA CATCCGCTCT CGATTCCCGA
CGCGGGGTCG TGCGGCTGCA TCGTGAAGTG CTCGATGCGC TGGGGCTACG CGCGTGGGAC
GCCGTGCGGA TCACGGGGGC GAGGGTCAGC GCGGCGGTGG CCGCCTGCGC GCCCGAGGGG
TCGGCTCCCG GCGTGCTGTT GGCCGATGAC GTGACGATGG CCAACCTCGG GGTCGCCGAA
GGCGCCGAAG TGGTCGTGGA ACCGTGTGAG GTCAGTGCCG CGCGCAGCGT CACCGTGGAC
GGCTCTCGGC TGGCTCGGAT GTCGCTTTCC CCGCACACGT TGCGGATGGC GCTGCTGGGC
AAGGTCTTCA CGGTGGGGGA CGCGGTGTCG TTGCTTCCCC AGGACCTCGC GCCACCGCCC
GGGTCGGACG TCTCCGCGGC GCGCGGTGCG CTGTCCCGCG CCATCGGGGC GACCTGGACC
ACCGAGCTGC TCACGATCAC GGCCACGGAA CCGTCGGGAC CGGTGGCGGT GGGTCAGTCG
ACCGTCGTGT CGTGGCGCGG TGAGGCCCCC GAGCCGGCAC CCGTCCCGCA GGAGGAGCCA
CGGCGGCAGC CGGAGCGGGG CGTGGCGGAG CCCGGGGGGT CGAACGCCGT CGTCGGGTCG
GACGAGACTC GGGAGGAACC ACCTCCAGTC TCCGATCTCG TGGGGGCCGA GTCGGTGGCC
CGACGGTTGA CGGAATGGTT CGATCTCGCC TTCCGGCAAC CCGAGCTGCT CGCCAAACTG
GGCACGTCAC CGAGGCTGGG TGTGCTGTTG TCCGGGCCGG AAGGCGTCGG CAAGGCCACG
TTGGTGCGTT CCGTCGCGCA TGCCGCCGAT GTCGACGTGG TGTCGCTGGA GGCTCCCACG
CTCGCGGTGT TGGAACCGGA CGCGGCGGTG GCCCGGCTGT CGGACGCCAT CTTCGGGGTG
AGTGCCGAAC GGCCGTGTGT CCTGCTCCTC ACCGACGTCG ACGCCCTGCT GCCCTCGTCG
CAACCCCCGC CGGTGGCGAC GGTGGTGCTC GATCGACTGC GCGCAGCGCT TGCCCGTCCC
CGGTTCGCCG TGGTGGCCAC CACGGCGCAT CCCGAGTCGG TGGACCCTCG TCTTCGTACG
GTGGACCTGC TCGACCGGGA GTTGCGACTC GGCATGCCCG ACGCGCGGAC CCGAACGGAA
CTGCTGCGGG TGTTGTTGCG CGACACACCG ACCGAGCACG GGATCGACCT GGGTGCGGTG
GCCGAGCGCA CGCCGGGCTT CGTGGCGGCC GACCTGGTGG CCCTGCGCAG GGACGCCGCG
TTGCGTGCGG CACTGCGCCA CGCGGACGAC GACGAGGAGC CCCGCGTACG ACAGCAGGAC
CTGCTGGAGG CCGTGGAATC GGTGCGCCCG ATCTCGATGT CCACCACCGA CACGTTGGCC
ACCGGCGGGA TCACCCTCGA CGACGTCGGC GACATGGCGG ACGTGAAGCA GGCGCTGACG
GAATCGGTGT TGTGGCCGCT GCGGTACCCG GATTCGTTCG AGCGGTTGGG AGTGGCCCCG
CCGCGGGGTG TGCTCATCTA CGGCCCACCC GGCAACGGCA AGACCTTCCT CGTGCGCGCA
CTGGCGGGCA CGGGTGCGCT GAACGTGTTC TCGGTCAAGG GCGCCGAGTT GATGGACAAG
TGGGTCGGCG AGTCGGAACG CGCCGTACGC GAACTGTTCC GCAAGGCCGC GGAAGCCGCC
CCCTCATTGG TCTTTTTGGA CGAAGTGGAC GCCTTGGCCC CCCGGCGGGG ACAGTCCAGC
GATTCCGGGG TGTCCGACCG GGTGGTGGCG GCGTTGCTCA CCGAGTTGGA CGGCGTGGAA
CCACTGCGGG ACGTCGTGGT CGTGGGTGCC ACCAACCGGC CTGAGCTGGT CGACCCGGCA
CTGCTTCGTC CGGGTCGGCT GGAGCGACTC ATCTACGTTC CCCCGCCGGA CGCCGAGGCG
CGGGGACAGA TCCTGCGGGC CGCGGCACGG AACACACCGC TGGCGGACGA CGTCGACCTG
GACGCACTGG CCGCGCGATT GGACGGCTAT TCCGCGGCCG ACTGCGCCGC GCTGATCAGG
GAGGCCGCCT TGGCGGCCAT GCGCGAGTCC CTGGCGGCCG CCGAGGTGAC GGCCCGGCAC
CTGGAACAGG CGCAACAGAC CGTGCGGCCG TCGCTCGACC CGGTGCAACT CGCGGAGATC
GAGGCGTACG CCCGGTCACG CTGA
|
|---|
| Protein sequence | MTSPRLSLTV RHTTSALDSR RGVVRLHREV LDALGLRAWD AVRITGARVS AAVAACAPEG
SAPGVLLADD VTMANLGVAE GAEVVVEPCE VSAARSVTVD GSRLARMSLS PHTLRMALLG
KVFTVGDAVS LLPQDLAPPP GSDVSAARGA LSRAIGATWT TELLTITATE PSGPVAVGQS
TVVSWRGEAP EPAPVPQEEP RRQPERGVAE PGGSNAVVGS DETREEPPPV SDLVGAESVA
RRLTEWFDLA FRQPELLAKL GTSPRLGVLL SGPEGVGKAT LVRSVAHAAD VDVVSLEAPT
LAVLEPDAAV ARLSDAIFGV SAERPCVLLL TDVDALLPSS QPPPVATVVL DRLRAALARP
RFAVVATTAH PESVDPRLRT VDLLDRELRL GMPDARTRTE LLRVLLRDTP TEHGIDLGAV
AERTPGFVAA DLVALRRDAA LRAALRHADD DEEPRVRQQD LLEAVESVRP ISMSTTDTLA
TGGITLDDVG DMADVKQALT ESVLWPLRYP DSFERLGVAP PRGVLIYGPP GNGKTFLVRA
LAGTGALNVF SVKGAELMDK WVGESERAVR ELFRKAAEAA PSLVFLDEVD ALAPRRGQSS
DSGVSDRVVA ALLTELDGVE PLRDVVVVGA TNRPELVDPA LLRPGRLERL IYVPPPDAEA
RGQILRAAAR NTPLADDVDL DALAARLDGY SAADCAALIR EAALAAMRES LAAAEVTARH
LEQAQQTVRP SLDPVQLAEI EAYARSR
|
|---|
| |