| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_34290 |
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| Symbol | |
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| ID | 8388753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3729635 |
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| End bp | 3732625 |
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| Gene Length | 2991 bp |
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| Protein Length | 996 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644977451 |
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| Product | nitrate/nitrite-sensing histidine kinase with HAMP domain protein |
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| Protein accession | YP_003135220 |
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| Protein GI | 257057388 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCGC TCGTTTTCGG TAGTCTGCGC GCGGTTTCGG AATTGGACGA CGCGGCGGAC
TTCAACGAGA CCGTGACTCA GGTCGAGGTC TCCCAACAGG TCGCCGTCGT GGTGCACGAG
TTGCAACGGG AACGGACGCT CATGGTCACG GCCATGTCGT CCAGTTGGGT CGACCCCGAC
GTCGTCAACG AACAGACGGC GAAAGTGGAC ACCGAAGTGA CGCGGCTGCG GGAAATGGTG
GCCGAAAGCG ACCTCGGTAA CGAGGAAACG CAGCTCATCT ACGAACGCTC ACTGCAGCGT
CTCGAGGCCC TGGGGCCATT GCGGGACACG CTCAACAACA CGGACCTTCC CGAACTGACG
GCGTACATCA CCTACAACTC GATCCTCCAG CCTCTGATCA ACCTCGGCCG TACGGTGAAC
CTGTCGGTGA CCGACAGGGG TCTGCTGAGG CAGGGCACCA CCGTGCAGGC CGTCACGGAG
ACCAAGGAGT ACACCTCACG GCAGAACGCG CTGCTGCAGA TCGCAGTCGG TAACCGCGGT
TTCTTCGGTG ACCTCTTCGA CCGGGCGGTC GCCGCCCAGG CCAGCGCCAG CGCCGCGGTC
GACAACTTCA ACGCCAACGC CACCCTGAGG GAACAGCAGC TCTACATCGA CACCGTTTCC
GGTGCCGAAG TGGACAACAG GGAACGGCAC ATCTCCAAGG CCTACTCGGC CGCAGGCTCG
CCCAGTGGGC TCAACGTCAA CTCGCGGCAG CTGTTCTCGG ACGGCAACGA CACCGTGGAC
AAGATGCGCG AGGTGGAAAG CGGTCTGTTG ACCGACCTTC GCGCGCAGGC GGAGACGCTG
GCCGGTCAGG CCAGCCAGGC CGCGTGGATC TTCTTCGGTC TGATGATCGC CACGTTGATC
GCCACGGTGG CACTGACCCT CGTGGTCATC AGGGCGCTCA CCAGGCCACT TAAGACACTG
CGCTCCAGCG CGTTGGAGGT CGCGTACGTC CGACTGCCCG AGACGGTGCG GCGCATCCTC
GCCGACCCGA ACCCGATGGA AGCGTCCCGG GAGGCCGTCA CGCCGGTCCC GGTGCACACG
CGCGAGGAGA TCGGGGAACT CGCGAGGTCG TTCGACGTGG TCCACGAGCG TGCTGTCCGG
CTGGCCGCCG AACAGGCGCT ACTGCGGGAG AACGTCAACG GCATCTTCGT CAACCTGTCG
CGGCGCAGCC AGCGCCTGGT GGAGCGTCAG CTCAGCATCA TCGACAAGCT GGAGTCCGAC
GAGCAGGACC CGGACCAGCT CGCGAGTCTG TTCGAGCTCG ACCACCTGGC GACGAGGTTG
CGGCGTAACG GTGAGAGTCT GCTGGTGCTC TCCGGAGCCG GGCTCACCAA GACGATGTCC
AAACCGGTCC CCGCGGCCGA CGTGCTCGGC GCGGCGGTGT CGGAGATCGA GCAGTACTCC
CGGGTGGAGC TGGGCACGAT CCCGGACGTG GCGGTGCACG GCAGGGCGGT GCACGACCTG
GTGCACCTGC TGGCGGAGCT GCTCGACAAC GCCACCTACT TCTCCGAGCC GGAGACCAAG
ATCAGCGTCA GGGCCGTCGT CACCCGACGC ACGTCGCTCG CCATCCAGAT CACCGACCGT
GGGGTCGGGA TGTCCGAGGA ACAGTTGGCC GAGGCCAACG AGCGTCTCGC CACTCCGCCG
GACCTCGACG TGTCGGTGAC CCGCCGCATG GGGCTGTACG TGGTCGCCCG GCTGGCGAAG
CGGCACGGCA TCGAGGTGCG GCTGAGGGAG AACGAGGACA TCGAGGGTGG CGTGATCGCC
CGCGTCGTGG TGCCCAGCGA ACTGCTCACC GAGGCACCCT CCATGGTGTC GTCGACCTCC
ACGCCGACGA TCGCGCCGCC GCGGGAGACG AGCAGCGAGA ATTCCCTGCC CTCGCATACG
GACGCTCCCG CTGTGCCGTC CGGCATGCCG TCACTGCCCG CGCCGCGCAA ACCGTCGGTG
GACGCGGACA GGACGGCGAT GCTGCCCCCA CCCCCGGCAC AACCGCCGCG ACAGGAGCTG
GAGCAGGAGC GGGAGGAGCA GCCCGAGCCC CCCGCTTCGT CGGGGCACAA CGGTCTGCGG
CCGCTTTCCC AGCCGATCAG TCTCGACGAC CTCGTCGGAG GTACCGGCAA GGCGGCGGGA
CCGTTCGTCA GCCCGGAACC GCCGGAACCT GCGTCGAAAC CCGCGTCGGA ACCTGCATCG
GAGCCTGCGA CCGAGCTCGT GCAGCCGGCT TCGCTCACCG GGTCGGAGGA GCCGGAGTGG
CCGACGGAGT CGCCCGACGG CGACACGAAC GACGGCCACG TCAACGAGGC GTACGCCTCC
GAGGCGTCGC CGAACGAGGA AACGCGCTAC GTCCCGGTGG AGCAGGACTC GACGTCCGAT
GCTTCGTTGG TCGGCGGTGA CGGGAGCGCG CTGGAGGACG ATGTACCTAC CAGGAGACTG
CCGATTTACC AGTCAGTGCT GTCCCGGTGG TTCAGCGAGG AAACTCCGCT CGACTCGGAG
CTCGACTCCG ACGGCGAGGC GTGGGGTGCT GAGCCCGGTT CGGTACCCGA GTCCGAAGCC
GACGGAACTG CGGGTGCCGA GATGAATGAC AGCACCGATG ACAAGACCAC AGACAGCGCG
CGGGACATCG GCTGGTACAG CGCCGCCGAC AGCGGCTGGC AGGCTGCGCA CGCGTTGCTG
GAGGAAAAGC ATGCGGAGAT CACGCCTGCG GGGCTGCCCA AGCGTGTGCC CAATGCATAT
TTAGTGCCGG GCTCGGTCTC TTCCAGCCGG GGCAACGCGT TCGCCGACAC CACCGCCGGG
GAACCGGGAC GCAGTGCCGT CGCCAGGTCG GCCGAGGCAG CGCGTAACCG TATGAAGAGT
TTCCAGCGTG GCTACCAGAG CGGTCGCCAC GCGCTCAAGG AGCCGTCGGC CCAGAGTGAG
CAGTTCGACA GGACGGGCAA CGACACCCGT CATAACGGGG CGAAGGAGTA G
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| Protein sequence | MTALVFGSLR AVSELDDAAD FNETVTQVEV SQQVAVVVHE LQRERTLMVT AMSSSWVDPD
VVNEQTAKVD TEVTRLREMV AESDLGNEET QLIYERSLQR LEALGPLRDT LNNTDLPELT
AYITYNSILQ PLINLGRTVN LSVTDRGLLR QGTTVQAVTE TKEYTSRQNA LLQIAVGNRG
FFGDLFDRAV AAQASASAAV DNFNANATLR EQQLYIDTVS GAEVDNRERH ISKAYSAAGS
PSGLNVNSRQ LFSDGNDTVD KMREVESGLL TDLRAQAETL AGQASQAAWI FFGLMIATLI
ATVALTLVVI RALTRPLKTL RSSALEVAYV RLPETVRRIL ADPNPMEASR EAVTPVPVHT
REEIGELARS FDVVHERAVR LAAEQALLRE NVNGIFVNLS RRSQRLVERQ LSIIDKLESD
EQDPDQLASL FELDHLATRL RRNGESLLVL SGAGLTKTMS KPVPAADVLG AAVSEIEQYS
RVELGTIPDV AVHGRAVHDL VHLLAELLDN ATYFSEPETK ISVRAVVTRR TSLAIQITDR
GVGMSEEQLA EANERLATPP DLDVSVTRRM GLYVVARLAK RHGIEVRLRE NEDIEGGVIA
RVVVPSELLT EAPSMVSSTS TPTIAPPRET SSENSLPSHT DAPAVPSGMP SLPAPRKPSV
DADRTAMLPP PPAQPPRQEL EQEREEQPEP PASSGHNGLR PLSQPISLDD LVGGTGKAAG
PFVSPEPPEP ASKPASEPAS EPATELVQPA SLTGSEEPEW PTESPDGDTN DGHVNEAYAS
EASPNEETRY VPVEQDSTSD ASLVGGDGSA LEDDVPTRRL PIYQSVLSRW FSEETPLDSE
LDSDGEAWGA EPGSVPESEA DGTAGAEMND STDDKTTDSA RDIGWYSAAD SGWQAAHALL
EEKHAEITPA GLPKRVPNAY LVPGSVSSSR GNAFADTTAG EPGRSAVARS AEAARNRMKS
FQRGYQSGRH ALKEPSAQSE QFDRTGNDTR HNGAKE
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