Gene Svir_34080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_34080 
Symbol 
ID8388732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3710609 
End bp3712267 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content65% 
IMG OID644977430 
ProductAMP-binding domain protein 
Protein accessionYP_003135199 
Protein GI257057367 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.448325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCACG CGTCCACGCT TCCGAGTTAC ACCTCCGGCA CGTCGACGGT GCCACTGCTC 
GGAGACACCA TCGGTGACAA CCTCGATCGA ACGGCACGGA CCTTCGCCGA CCGGGACGCC
CTCGTCGACT ACGCGAGCGG TCGCCGCTGG AACTATCGGG AGTTCGTCGC CGACGTCGAC
GCGTTGGCCC TCGGTCTCCT GTACAGAGGT GTCACGAAAG GCGACCGCGT GGGCATCTGG
GCGCCGAACT GCCCGCAATG GACTCTGACC CAGTACGCGA CGGCCAAGAT CGGCGCGATC
CTGGTCAACA TCAACCCCGC GTATCGGGAG CACGAGCTGG AGTACGTCCT CAACCAGGCC
GGGATCTCCA CGCTGATCGC CGCGAGCGAG TTCAAGACCT CCGACTACGC GGGCATGATC
CACAAGGTGC GTCCCCGGTG CCCGTCATTG ACCGATGTGG TGTTCCTCGA CGGAGACCAC
TGGGACGACC TGCTGGATAC GGGGCGCAAG GCCGATCCGG AGAGGTTGGC GCGCGCCCAG
GCGGCGTTGA GCGCCGACGA CCCCATCAAC ATCCAGTACA CGTCCGGCAC GACCGGATTC
CCCAAGGGCG CGACGCTGTC GCACCACAAC ATCCTCAACA ACGGCTTCTT CGTCGGCGAA
CTGTGCCGTT ACACCGAGGT CGACCGCATC TGCCTGCCGG TGCCCTTCTA CCACTGTTTC
GGGATGGTCA TGGGGAACCT CGCCGCCACC ACCCACGGGG CGTGCATGGT GATCCCCGCG
CCCTCGTTCG ATCCCGCGAA GACCCTCGCC GCCGTGCAGG CCGAACGCTG CACCTCGTTG
TACGGTGTGC CGACGATGTT CATCGCCGAG CTCGCCGAAC CGGACTTCGA CTCCTACGAC
CTGTCCAGCC TGCGCACCGG CATCATGGCG GGTTCACCGT GCCCGGTGGA GGTGATGAAG
CAGGTCATCG AGCGCATGGG CATGACCGAG GTGTCCATCT GCTACGGCAT GACCGAAACC
TCGCCCGTGT CGATGCAGAC CAGGGTCGAC GACTCCATCG AGCGGCGGGT GTCCACCGTC
GGACGGGTCG GACCGCACCT CGAGGCCAAG ATCATCGATC CGGAGACCGG GTTGACCGTC
CCCCGCGGCA CCCACGGTGA GCTGTGCACA CGCGGCTACT CGGTGATGCT CGGGTATTGG
GAGCAGCCGG ACAAGACCGC CGAGGTCATC GACGAGGCGC GCTGGATGCA CACCGGCGAT
CTCGCCGTGA TGGACGAGGA CGGCTACGTC AACATCACCG GACGCCTCAA GGACATGGTG
ATCCGGGACG GGGAGAACAT CTACCCGCGG GAGATCGAGG AGTTCCTCTA CACGCATCCG
GACATCCTCG ACGCGCAGGT GATCGGTGTG CCCGACGAAC GCTACGGCGA GGAACTCATG
GCCTGGGTCC GGATGCGGGA GGGCGCCGAA CCGCTGACGG CCGAAAGTCT GCGGGAGTTT
TGCACCGGCA AACTCGCCCA CTACAAGATC CCCCGCTACG TGCATGTGGT GGACGAGTTC
CCGATGACCG TCACCGGCAA GGTCCGCAAG GTGGAGATGC GCAAGCGGGC GGTGGAGTTG
CTCGGCCTCG AAGCCGTCGC CCGTACCCGA CACGCGTGA
 
Protein sequence
MQHASTLPSY TSGTSTVPLL GDTIGDNLDR TARTFADRDA LVDYASGRRW NYREFVADVD 
ALALGLLYRG VTKGDRVGIW APNCPQWTLT QYATAKIGAI LVNINPAYRE HELEYVLNQA
GISTLIAASE FKTSDYAGMI HKVRPRCPSL TDVVFLDGDH WDDLLDTGRK ADPERLARAQ
AALSADDPIN IQYTSGTTGF PKGATLSHHN ILNNGFFVGE LCRYTEVDRI CLPVPFYHCF
GMVMGNLAAT THGACMVIPA PSFDPAKTLA AVQAERCTSL YGVPTMFIAE LAEPDFDSYD
LSSLRTGIMA GSPCPVEVMK QVIERMGMTE VSICYGMTET SPVSMQTRVD DSIERRVSTV
GRVGPHLEAK IIDPETGLTV PRGTHGELCT RGYSVMLGYW EQPDKTAEVI DEARWMHTGD
LAVMDEDGYV NITGRLKDMV IRDGENIYPR EIEEFLYTHP DILDAQVIGV PDERYGEELM
AWVRMREGAE PLTAESLREF CTGKLAHYKI PRYVHVVDEF PMTVTGKVRK VEMRKRAVEL
LGLEAVARTR HA