| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_33890 |
|---|
| Symbol | |
|---|
| ID | 8388713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3689014 |
|---|
| End bp | 3691263 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644977411 |
|---|
| Product | glycosyl transferase |
|---|
| Protein accession | YP_003135180 |
|---|
| Protein GI | 257057348 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.47583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGGGT TCCTCCGCCG CCACTGGCTG CTGCTCCTCC TGCTCACCGG TGGTGTCACG
CTGCGGGTGT TGGTGTGGCT GGCGTACGAA CCCGCTCTGC TCTACATCGA CAGCTTCCGC
TACCTGGGGA ATCTCGAAGC CCTACGGCCC ACCGATCTCA ACCCGCTCGG GTACACGGTG
GTGCTCAAGC TGCTGCTCTC CTTCGGCGGC CTGGCGTTCG TCCAAGCGGT ACAGCACCTG
GTCGGGGTGC TGCTCGCGGT GTCGCTGTAC GCGCTCGTCC TGCGGTACAC GTCGCGGACC
TGGATCGGCG CGCTGGCCTG CGCCCCCGTG TTGCTCGACG CCTACCAGCT GCAGATCGAG
GCGCTCATCA TGTCGGAACT GTGGTTCCAG GCCCTTCTGG TGGGCGCGTT GTGGGCGTTG
CTCGGGAAGG GGGAGCCGAC AGGGGGACGG GCCGCTGTGG CCGGGGTGCT CATCGGCTGC
GCCGTGATCA CGAGGACCAT CGGCTTCACC CTGGTGGTGC CGATGGTGGG GTACCTGGTG
TTGGCGGGCG GGGCGTGGCG CAGCAGGGCC GGATGGAGAC GCATCGCCGT GCGCGGTACC
GCCGGGCTGC TCGGCGTCGC CGTCGTCCTG CTGCCGTACT CGGCGTACTT CCGTTCCCAG
GCCGGTTACT GGGGGCTCAC CGGCGCGACC GGCAACGTGC TCTACGGCCG CACGGCCACC
GTCGCCGACT GTGCCGAGTT ACCCCAGGAG GATGCGGGAC TGCAGCTGTT CTGTCCCGAC
GAACCTCGTG ACGAGCGTCC GGGCATCGAC TACTACACGC ATTTCGTGTA CGGCGATCCG
AGTTGGCCCC CGGAGGGGTT GCCCGACGGC AGGACCAAGG AGGAACTGGC CAACCAGTTC
ACCCTGGCGG TCGTCCGCAA TCAGCCGTTC GACTTCTTCG GCTCGATCGC GAAGGACTTC
CTGAAGAACT TCGACTCGCT CAAACGCACC CACCCCAAGG ACGTGCCCGT CGAACGCTGG
CACTTCCAGG TGACCTACCC CTATTACGAC ATCGGCCCCG ATTCGGTGGA GCGGTACAAC
GCGGTGACGT ACGCCTACGA CGGCGTGCTG CCGGATTCCG ACACCGATCT GGCCTCGTTC
CTGCGCGGAT ACCAGCTCGG CGGGGGCTAC ACCTGGGGGC CGCTGCTCGC CGCCTTCGCC
ATGCTCGGGC TGCTCGCCAG CGTCGGGACC GGTCGGGCGC GGGCGTCGGG GCTGAGGTCG
GCCGCGTTCC TCGCCACCGG TGGTGGACTG ATCATCCTGC TGGGGGCCGC GGCGTTCGAA
TTCTCCTGGA GGTATCAACT TCCCGCACTG GTGCTCCTCC CTCTCGGGGG CGCATTGGGA
CTCGCCGCGA TCCTGGGTAC ACGTTCCGGA GCATCGGGTG TGGCGACAGA ACGGAGGTCC
GGATTGGACG AATACCCCGA CGAGGTCGAC GCCGAGGCGG TGGCCGACTT CCGCCAACGC
TACGGTGACA ACCCACTCAC TCCGCTGGTC GTGGTGATCG CGGCGTACAA CGAGGCCCAG
GGCATCGGCG CCGTACTACG CGGCATGCCC ACCCACGTGG GCGATGTGCC CGTGTCCACC
CTCGTCGTGG TGGACGGGGC CACCGACGAC ACCGCCGCCG TCGCACACGA GGCCGGCGCG
TACGTGTGCG TGGCCAGCCG TAACCGCGGT CAGGGGGCCG CACTGCGTCT CGGCTACCAC
CTGGCCGGTG AATCCGGTGC GCGTTACATC GTCACCACCG ACGCCGACGG ACAGTACGAC
AACAACGAGA TGCCGTTGCT GGTCAAACCG CTGCTCGACG ACACGGCCGA CTTCGTCACC
GGTTCCCGCA GGCTCGGCAG CTACCAGCAC GACAGTGCCA TCCGCTGGCT CGGCGTCCGC
GTGTTCTCCT GGATCGCCTC GTTGTTGACC CTGCGCAGGA TCACCGACAC CTCGTTCGGG
TTCCGTGCGA TGAAGGCCGA GCTCGCGATG TCGGTGACAC TCCGGGAACC GCAGTATCAG
TCCTCCGAGT TGTTACTCGG GGTCATGGCG CGGGGAGCGC GGGTGTTGGA GGTCCCGATG
ACCATGCGAC TGCGCAACAA CGGCACCAGC AAGAAAGGCC GCAGCATCAA ATACGGGGCC
AATTACGCGA GGGTCATGTT TTGGACCTGG CTTCGCGAGT ACGTGTTTCG TGGCGGAAAA
CGAGCCGGTC GAGCAGCGCG AATTTCATGA
|
|---|
| Protein sequence | MPGFLRRHWL LLLLLTGGVT LRVLVWLAYE PALLYIDSFR YLGNLEALRP TDLNPLGYTV
VLKLLLSFGG LAFVQAVQHL VGVLLAVSLY ALVLRYTSRT WIGALACAPV LLDAYQLQIE
ALIMSELWFQ ALLVGALWAL LGKGEPTGGR AAVAGVLIGC AVITRTIGFT LVVPMVGYLV
LAGGAWRSRA GWRRIAVRGT AGLLGVAVVL LPYSAYFRSQ AGYWGLTGAT GNVLYGRTAT
VADCAELPQE DAGLQLFCPD EPRDERPGID YYTHFVYGDP SWPPEGLPDG RTKEELANQF
TLAVVRNQPF DFFGSIAKDF LKNFDSLKRT HPKDVPVERW HFQVTYPYYD IGPDSVERYN
AVTYAYDGVL PDSDTDLASF LRGYQLGGGY TWGPLLAAFA MLGLLASVGT GRARASGLRS
AAFLATGGGL IILLGAAAFE FSWRYQLPAL VLLPLGGALG LAAILGTRSG ASGVATERRS
GLDEYPDEVD AEAVADFRQR YGDNPLTPLV VVIAAYNEAQ GIGAVLRGMP THVGDVPVST
LVVVDGATDD TAAVAHEAGA YVCVASRNRG QGAALRLGYH LAGESGARYI VTTDADGQYD
NNEMPLLVKP LLDDTADFVT GSRRLGSYQH DSAIRWLGVR VFSWIASLLT LRRITDTSFG
FRAMKAELAM SVTLREPQYQ SSELLLGVMA RGARVLEVPM TMRLRNNGTS KKGRSIKYGA
NYARVMFWTW LREYVFRGGK RAGRAARIS
|
|---|
| |