| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_32860 |
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| Symbol | |
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| ID | 8388610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 3565097 |
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| End bp | 3568876 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644977312 |
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| Product | Rhs family protein |
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| Protein accession | YP_003135081 |
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| Protein GI | 257057249 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.390343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAAAC CCAAAAGACC CGGGGGCGGA GGTAACGGCG GTAACGGGGG AAAACCGTCG
AACAACAAGC CCTCGCAGAA GTTCGGTGGA ATCGACGCCG GCTCCAGCGT GTCCCAAGCC
CAAAACGCCA CCTACCAAGT AGCCCAAGGA GGCCGACCCG GCAGCAACGG CCACAACAAC
ACCACCACAC CTTCCAACAC GACGACACCC CCGAAGAGCG ATTCGCCTCC GAAAACCGAC
TCGTCGACCC CCACCAAGCC CAACAACACC AGTGACACCC CGCTGCCGAA CAGGTCCGAC
GACCCACAGA GCCCGACCAG GGACGGGGAC AAGCGCAACA CCACGGGTGA CCCCATCGAC
ATCGCCACCG GCGAGATGTA CCTGCGGCAG ACCGACGTGG AACTACAGTC GACCCTGCCC
CTGGTGTTGC GACGAACCCA CCTGTCCTCG TACCGTGTCG GCCTCCGGTT CGGCCCGTCT
TGGGCATCCA CATTGGACCA AAGGCTGGAG TTGAGCAGTG CCGGTGTGTC GTTCGCCGCA
GAGGACGGCA AACTGCTGCT GGCCCCGGAT CCGGCGGTGG GTGCCACCGT CAAGTTCGAG
GGATCGCCCC ACAAGCTGAC CCGCAACGAC GACGGTGGCT TCACCCTCAC CGAACACGGC
ACCGGGCGGA GGCTGCTGTT CGCCCCCGGT GGGAACGTCC TGCCGATCAC CGCGATCGTG
GACCGCAACG GAAACCGGAT CGACTTCGAG TACGACGCTG CGGGAACCCC CGTCGAGGTG
CGGCACTCCG GCGGCTACCG CATCCGTGTC GAATCCGAGG GCGGTCTGGT CACGGCGCTG
TACCTCCGCG AAGCGGACAA CGGCTCCGAC GTGCTGCTGA TGCGCTACGG CTACGAGGAC
CGGCGGCTCA CCGAGGTGAT CAACGCCTCG GGGCTGCCGA TGCGCTTCAC CTACGACCAC
GCGGGCCGCA TCATCGGCTG GACCGACCGC AACGACAGGT GGTATCGCTA CACCTACGAC
TCCCAAGGCC GCGTGGTGTC CGGGGAGGGG TCCGGCGGAT TCCTCAGCGG CACGATGGAG
TACGACACCG AGAACCGGAT CACCTACTGG ACCGACTCCC AGGGCGCCCG CACGACCTAC
CACCTCAACG AAGCGGGCCA GACGATCCGT GAAATCGACC CGCTGGGCAA CGAAACGCTG
TCCGAATGGG ATGAATACGA CCGTCTGTTG TCCCGTACCG ATCCGCTCGG TCGTACCACT
CGCTACGAGT ACGACGACGA GGGCAACTTG ATCGTCCTGA CACGTCCGGA CGGCAGCCAG
GCCCGGTTCG AGTACAACGA GCTCGGGCTT CCGGTCACCA TCATCGCACC GGACGGCACG
GTGACACGGC GCGAATACGA CGAACGCGGG AACCTCACCA AAGAAATCGA TCCGCTTGGA
GCGGTCACTG GCTACGCGTA TGACGAACGC GGGCATCTCA CGAGCATCAC TGACGCCTTG
GGCAATGTCA CTCGAGTCAA AACCGACGCA GCGGGGTTGC CGATCAAGGT GACCTATCCC
ATGGGCAATA CAAGCCGATA CATGCGTGAC GCATTCGGAC GGGTCTCGGA GGCGATCGAT
CCGTTGGGCG GCACGACTAG GTTCGGCTGG ACCGTGGACG GCAAGCCGGC ATGGCGAACG
CTACCGGACG GAGCGACCGA GCGCTGGATC TACGACGGGG AAGGAAACCT TCGCGTCCAT
GTCGACGCCC TGGGACAGGA GACTCGCACC GAGGTCACGC ACTTCGATCT GCCGTCGGAG
GAAATCCGCC CGGACGGCAC CCGTCTGCGG TTCGACTACG ACACCGAGTG TCGTCTGGTC
AGCGTCACCA ACGAGCAAGG TCTGGTGTGG CGCTACGACT ATGACGCGGC CGGGAATCTA
GTCCGAGAAA CCGACTTCAA CGGCCGGGTA CTCACCTATC AACACGATGC TGCCGGCCAA
TTGATCGCGC GCACCAACGG CGCCGGCGAA ACCACGCACT TCGCCCGCGA TGTCTTCGGC
AACGTGATCG AGCGCCGCAG TGGTGCGGTC ACAGCGACAT TCACCTACGA CCCACTGGGA
CGCCTAGTCG AGGCGATGGA CAGCGATACA CAGGTCACCT TCCGACGTGA CCCCCTCGGC
CGTGTGCTCG CCGAAACCGT CAACGGCCGC ACAGTTGCCT CGGTCTACGA CGCGCTGGGC
CGCCGGATCC GGCGACGCAC GCCGTCCGGC GCCGAGACCG TGTGGGAATA CGACGCGAAC
GACCAGCCCG TAGCGTTGCA CACCGGCGGG CACACACTGC GCTTCGACTA CGACCGTGCA
GGTCGCGAGG TGCAGCGGCA GCTGGGACCG ACGGCGATCC TGGCCCAAGA GTGGGACACC
AACCACCGAC TGATCTCACA GGCGGTCACC GGCGCGGCCG GTCAGCGGAT CCAACAGCGT
TCCTACACCT ATCGCGCCGA CGGTTTCCTC ACCAAACTCG ACGACAAGCT CACCGGCCCA
CGCACGTTCG AGCTCGACCG CATAGGCCGC ATCACCGCCG TGACCGGAAC GGGGTGGGCC
GAGCGCTATG CCTACGATGC GGCGGGAAAC CTCACCCATG CTTCCTGGCC GGCTCCCCCT
TCCTCTGACA TCGAGGAACT CGGCGACCGC GAATACAGCG GGACCCTGAT TCGCCGCGCG
GGCAAGGTTC GTTATGAACA TGACGCCCAG GGACGGATCA TCTTGCGCCA GCGAAAGCGC
CTGTCTCGTA AGCCCGAGAC CTGGCGCTAC TTCTGGAACG CCGATGACCG CCTGATCGAA
GTCCTCACCC CGAACGGAGC ACGCTGGCGT TACCGCTACG ACCCGCTGGG CCGCCGTGTC
GCCAAGCAAC GGTTGACACC GGATGGCTCG GGTGTGCTGG AGCAGATCGA GTTCACCTGG
GACGGCGCGG TCCTCGCGGA ACAAGCCCAC ACCGACGGTG TGGCCAACGG CCCACGACTG
GCTGACCGCC GGGTGATGGT CTGGGACTAC GAACCAGGCA CGTTCCGTCC CCTGGTTCAA
AGGGAACGCT CCCAGCTCCG CAACGCGCCC CAGCAGTGGT TCGACGAACA GTTCTACTCG
ATCGTCACCG ACATCGTCGG CACCCCAACG GAACTCATCA ACATCCACGG CGGCATAGCC
TGGTACCACC GGACAACGCT CTGGGGCATC ACCACAGACC AATCCCGCAC CGGCGCCTAC
ACCCCGTTAC GGTTCCCGGG CCAGTACGCG GACCCAGAGA CCGGGTTCAA CTACAACTTC
CAACGTCATT ACGACCCTGC TTCAGCGCGT TACGCTGGCA CGGACCCACT AGGGCTGGTG
GGTGGGTTCG ATCCCCACAG CTACGTGTGG AATCCCTACG CGTGGATCGA TCCGCTGGGC
TTGAAGAAAT GTGATCCTGA TCGACCCAAA CACTTCGAAA AGGCCAAGGA GAACTTGGCA
GAATTCAACA GCATAGATGA AGCCCGTGAG GCGGCGATCC AGTATTCCGG CCTGACTGAT
AAAAAAGTGC CGCATGTTCA GAAGCTGGGC CCCTGGGAGG GATTCTACTC CGGGGAGATG
TCGCCAGACG GAAAGCGAGG CTGGCGAGTC GACTGGGACG ACAAAAAGGG AGTTCACATA
AACTGGTGGG ACCACACAGG GGGACGGAAA CGTCGCGACT GGTGGTATGG GGCGAACCAG
GTTCCTTCGA GCTCGTACGA CGACTACATG GCCGTGCTTG AAGAACTGAA CCCACTGTGA
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| Protein sequence | MAKPKRPGGG GNGGNGGKPS NNKPSQKFGG IDAGSSVSQA QNATYQVAQG GRPGSNGHNN
TTTPSNTTTP PKSDSPPKTD SSTPTKPNNT SDTPLPNRSD DPQSPTRDGD KRNTTGDPID
IATGEMYLRQ TDVELQSTLP LVLRRTHLSS YRVGLRFGPS WASTLDQRLE LSSAGVSFAA
EDGKLLLAPD PAVGATVKFE GSPHKLTRND DGGFTLTEHG TGRRLLFAPG GNVLPITAIV
DRNGNRIDFE YDAAGTPVEV RHSGGYRIRV ESEGGLVTAL YLREADNGSD VLLMRYGYED
RRLTEVINAS GLPMRFTYDH AGRIIGWTDR NDRWYRYTYD SQGRVVSGEG SGGFLSGTME
YDTENRITYW TDSQGARTTY HLNEAGQTIR EIDPLGNETL SEWDEYDRLL SRTDPLGRTT
RYEYDDEGNL IVLTRPDGSQ ARFEYNELGL PVTIIAPDGT VTRREYDERG NLTKEIDPLG
AVTGYAYDER GHLTSITDAL GNVTRVKTDA AGLPIKVTYP MGNTSRYMRD AFGRVSEAID
PLGGTTRFGW TVDGKPAWRT LPDGATERWI YDGEGNLRVH VDALGQETRT EVTHFDLPSE
EIRPDGTRLR FDYDTECRLV SVTNEQGLVW RYDYDAAGNL VRETDFNGRV LTYQHDAAGQ
LIARTNGAGE TTHFARDVFG NVIERRSGAV TATFTYDPLG RLVEAMDSDT QVTFRRDPLG
RVLAETVNGR TVASVYDALG RRIRRRTPSG AETVWEYDAN DQPVALHTGG HTLRFDYDRA
GREVQRQLGP TAILAQEWDT NHRLISQAVT GAAGQRIQQR SYTYRADGFL TKLDDKLTGP
RTFELDRIGR ITAVTGTGWA ERYAYDAAGN LTHASWPAPP SSDIEELGDR EYSGTLIRRA
GKVRYEHDAQ GRIILRQRKR LSRKPETWRY FWNADDRLIE VLTPNGARWR YRYDPLGRRV
AKQRLTPDGS GVLEQIEFTW DGAVLAEQAH TDGVANGPRL ADRRVMVWDY EPGTFRPLVQ
RERSQLRNAP QQWFDEQFYS IVTDIVGTPT ELINIHGGIA WYHRTTLWGI TTDQSRTGAY
TPLRFPGQYA DPETGFNYNF QRHYDPASAR YAGTDPLGLV GGFDPHSYVW NPYAWIDPLG
LKKCDPDRPK HFEKAKENLA EFNSIDEARE AAIQYSGLTD KKVPHVQKLG PWEGFYSGEM
SPDGKRGWRV DWDDKKGVHI NWWDHTGGRK RRDWWYGANQ VPSSSYDDYM AVLEELNPL
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