| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_32730 |
|---|
| Symbol | |
|---|
| ID | 8388597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3552993 |
|---|
| End bp | 3554324 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644977300 |
|---|
| Product | trypsin-like serine protease with C-terminal PDZ domain protein |
|---|
| Protein accession | YP_003135070 |
|---|
| Protein GI | 257057238 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.229019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA ACGACCCCTC CGCACAGGAC AGGCACACCC CGGAACCGGG AACGCCTGAG
CAGCCGAATC CGGAAGCGCA TACCGGGTCG TCGGAGCGTG AGGACACCGA GCGGTATCGG
GAGGGTGGTC AGGGAACCGA CGAGTTCCGC TACCCGCCCC GGACCCCGAT CGGCGACTAC
GCCCAGGGCG GATATCCCAC ATCGCCCCAT ACCCAGTCCG GCTACACCGC CTATTCGCTC
GGGCCGACAC AGTCGTCGCC GGAGCGCCGT GGGATGCCGG GCAGGCTCGT CGCGGGGGTC
GCCCTGCTCG CTTTGCTCGT CGGTGGGGGA GCGGGCGCCG CGACCGGTTA TCTCGCGGCG
GACACGGCTA CGGAGTCGTC CGCGCCGAAC GCACTCAACC AGCCGCCGCC TCAGGCCAGA
CAGACCGGTA ACGCTCCTGA AGGAAGTGTC GAGGCCGTCG CCGAGAAGCT CAAACCCAGT
GTGGTGCAGC TGCAGGTCAG AGGATTCGGT TCGGCCAACG AGGGTTCCGG TTTCATCCTC
AGCGAGGACG GTTACATCCT CACCAACAAC CACGTGGTCG AGGCGGCGGC TCGCGGAGGG
CGGATCACCG TGGTGTTCCA CGACGGTGAG GAGACCTCGG CCAGGATCGT GGGTCGTGAC
CCGACCACCG ACATCGCCGT CGTGCGCGCC GAGAACGTCA GTGGTCTGAC CACCGTTGAA
CTCGGACGTT CCGACGACCT TCGGGTGGGG GAGTCGGTGG TCGCGATCGG GTCGCCGTAC
GAGCTCGCGG GAACCGTGAC GGCCGGGATC GTCAGTTCGT TGAACCGTCC GGTGACCGCG
GGCGGGCAGG GTGATCAGAC CACCGTCATG GACGCCATCC AGACCGACGC GGCCATCAAC
CCCGGTAACT CCGGGGGGCC GTTGGCCAAC ATGCAGGGCC AGGTCATCGG CATCAACTCC
GCCATCTACA GCCCCTCGCA GGGCGGCAAT GTCGGGATCG GATTCGCCAT CCCCATCGAT
CAGGCGCGTA GGACCGCCGA CGAGATCATC AAGAACGGCC ATGCCACCCA GACCTACATC
GGGGCGACCG TCGGGAACGC TCCGAGCGGT GGCGCGGTCA TCGGTGACGT GGAGTCGGGC
AGCCCCGCGG AACAGGCGGG CCTCAAATCG GGGGACGTGG TCGTGAAGAT GGACGACCGA
CGCATCGAGG ACGCCAACGC GCTCGTCGCA TCGATCCGTA CCCGGGCGCC CGGTGAGAAG
GCCACGTTCA CGCTCGCCGA CGGCAACACC GTCGAAGTCA CACTCGGTGG GCAGCCGGTG
CGGGTCAATT GA
|
|---|
| Protein sequence | MTDNDPSAQD RHTPEPGTPE QPNPEAHTGS SEREDTERYR EGGQGTDEFR YPPRTPIGDY
AQGGYPTSPH TQSGYTAYSL GPTQSSPERR GMPGRLVAGV ALLALLVGGG AGAATGYLAA
DTATESSAPN ALNQPPPQAR QTGNAPEGSV EAVAEKLKPS VVQLQVRGFG SANEGSGFIL
SEDGYILTNN HVVEAAARGG RITVVFHDGE ETSARIVGRD PTTDIAVVRA ENVSGLTTVE
LGRSDDLRVG ESVVAIGSPY ELAGTVTAGI VSSLNRPVTA GGQGDQTTVM DAIQTDAAIN
PGNSGGPLAN MQGQVIGINS AIYSPSQGGN VGIGFAIPID QARRTADEII KNGHATQTYI
GATVGNAPSG GAVIGDVESG SPAEQAGLKS GDVVVKMDDR RIEDANALVA SIRTRAPGEK
ATFTLADGNT VEVTLGGQPV RVN
|
|---|
| |