| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_32300 |
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| Symbol | |
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| ID | 8388554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3501456 |
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| End bp | 3505055 |
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| Gene Length | 3600 bp |
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| Protein Length | 1199 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644977257 |
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| Product | transcription-repair coupling factor Mfd |
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| Protein accession | YP_003135029 |
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| Protein GI | 257057197 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.742659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.328282 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGATT CGCCGAACGG TTCGTCGTCC GGGGCCTTGT CCGGTCTACT GTCCGCGCTG
CTGTCCGACC CTGCGTTGCG CGGCGTCGTG GAGCAGGCGG GTGCCCCGCT GCTGGATCTC
GACGGCTCCA CCGCCACCCA TCAGCTCGTC GTCGCGGCGC TCGCCGCCGA CCGGGGCGCG
GGACGTCCCG TCCTGGCCGT CACACCCACC GGCAGGCAGG CCGAGGAGCT GACCGCTGCG
CTGCGCAGCC TGCTCGGCGA GAATCTGGTC GCCGACTTCC CGTCGTGGGA GACCCTGCCG
CACGAACGGC TGTCGCCCAG GGCGGACACG GTCGGCAAAC GGCTGGAGGT GCTGCGCAGA
CTGGCACAGC CCGATCACGG TGGGCTGCGA GTCGTGGTGG CCACCGTGCG CAGCCTCATC
CAACCCATGG CACCCGGTCT CGGCGGGCTG CATCCCGTCG AACTCAGGGT GGGCCAGGAA
AGCGATTTCG AGGCCGTGCT CGACCAACTC GTCGAACTCG CCTACACCCG CGTCGACATG
GTGGAAAAAC GCGGCGAGTT CGCTGTGCGA GGCGGGATCC TGGACATCTT CGGCCCGACC
GCCGAACATC CGCATCGCAT CGAGTTCTGG GGCGACGAGG TCAGTGAGAT CCGCGCGTTC
GCGGTGTCCG ACCAGCGGTC CCTGCCCGGC GAGGTGACCG AGGTGATCGC GCCCCCGTGC
CGGGAGATAC TGCTCACCCC GGACGTCAAG GCACGGGCCG CGGAACTCGC CCGAACACAC
GCCGACAACG CCCAACTGTC GGAGATGCTC ACCAAACTCG CCGACGGTGT CCCCTGCGAG
GGCATGGAGG CACTCATCCC CGTGCTCTGC GAAGGCGAGT TGCAACTGCT CACCGACGCC
CTGCCGGAAG GCACCCACGT GGTGCTCATC GAACCCGAGA AGAGCCGCGC CAGGGCGGCG
GACCTGGTGC GTACGGGTCA GGAGTTCCTG GAGGCGTCGT GGATGAGCGC CGCCGACGGG
GGCGAGGCCC CGTTGGACCT CGGCGCCTCC GCCTACCGCG ACCTGGACGA GGTGCGCGCT
CACGCCACGG AGACGAACCG GTGTTGGTGG ACGCTGTCGC AGCTGACCAG TGAGAGCGGT
GCCCACCACG TCGCCATCGA CTCCGCGCCC GCCTATCGGG GTGAACTGGA GCGGGTGGCC
ACCGACCTGC GTGCCCACAC CGCCTCCGGT GGCGCGGCCG TGGTGGTGGT CGCCGGTGCG
GGTACGGCGA AACGTGCAGT CGATCAGTTG TCCGGCGCGG AGGTCCCGGC GACCCTGGCC
ACCGAGGGGC TGACCGAGGA GCCCAAACCC GGCGTCGTGA CGGTGACCTG CGGCGGTATC
TCGGACGGCT TCGTGGCCCC CGGCAGCGCG TTGGTCGTGC TCAGCGAGGC CGACATCACC
GGACGCGGCG CCACGGCGGG ACGGTCGAAC GTGGACCTGA ACACCAAGAT GCCGTCGCGC
CGTCGTAACG CCGTCGACCC GCTCGCGCTG AAGTCCGGCG ACTACGTGGT GCACGACCAG
CACGGCATCG GTCGGTTCGT CGAGATGGTG CGGCGCACCG TCGGCGGGGC CACGCGCGAG
TACCTGGTGA TCGAGTACGC GCCGTCGAAA CGGGGCCACC CCGGCGACCG ACTGTTCGTG
CCGACCGACC AGCTCGACGA AGTGTCGCGC TACGTCGGTG GGGAGACGCC CACGCTCAAC
AAGATGGGCG GGGCGGACTG GAAGAAGACC AAGGCCAGGG CCCGCAAGGC CGTCAAGGAG
ATCGCCGCCG AACTCGTACA GCTCTACGCC GCGCGCCAGG CGGCCCCGGG ACACGCGTTC
AGCCCCGATA CGCCGTGGCA GCGCGAATTG GAGGACGCGT TCCCGTTCAC CGAGACCGCC
GATCAGCTCG CCGCCATCGA CGAGGTCAAG CGCGACATGG AGCGCGACGT CCCGATGGAC
AGGGTGATCT GCGGGGACGT CGGCTACGGC AAGACCGAGA TCGCCGTGCG GGCGGCGTTC
AAGGCCGTGC AGGACGGCAA ACAGGTCGTG GTGCTGGTGC CCACCACGAT CCTGGCGCAG
CAGCACTTGG CGACGTTCTC CGAACGCATG CGCTCGTTCC CGGTCACGAT CAAGGGACTG
TCGCGGTTCA CCGATCCGCA CGAGGCCGAA CAGGTGATCA ACGGGCTGGC CGACGGTGAG
GTGGACATCG TCATCGGCAC GCACCGACTG TTGCAGTCGA ACGTGCGGTA CAAGGACCTG
GGTCTGGTGA TCGTCGACGA GGAACAGCGG TTCGGCGTCG AGCACAAGGA GCACATCAAG
GCGCTGCGCA CCCACGTGGA CGTGCTCACG ATGTCGGCGA CCCCGATCCC GAGGACGTTG
GAGATGAGCA TGGCGGGCAT CCGGGAGATG TCCACCATCC TCACCCCGCC CGAGGACCGG
CACCCGATCC TCACCTACGT CGGCGCGTAC GACGACAAAC AGGTCGCGGC GGCCATTCGT
CGGGAGCTGC TCCGTGACGG CCAGGTGTTC TACGTCCACA ACCGGGTGTC GTCGATCGAG
CGGGCGGCGC GGAGGTTGCG GGAGCTGGTG CCGGAGGCAC GTGTGGTCAC CGCGCACGGC
CAGATGAACG AGCATCGGCT CGAACAGATC ATCCAGGGAT TCTGGGAACG CGAGTACGAC
GTGCTGGTGT GCACCACGAT CGTCGAGACG GGGCTCGACA TCTCCAACGC CAACACGTTG
ATCGTGGAGC ATGCCGACCA GCTCGGACTG GCCCAACTGC ACCAGCTGCG GGGTCGGGTC
GGCCGAGGGC GGGAGCGCGG TTACGCGTAC TTCCTGTACC CGGCGGACAA ACCGTTGACC
GAGACCGCGC ACGACCGACT CGCGACCATC GCCCAGAACA CGGAGTTGGG TGCGGGGATG
GCCGTGGCGA TGAAGGACCT GGAGATCCGG GGCGCGGGCA ACATCCTCGG CGCCGAGCAG
TCCGGGCACA TCGCGGGGGT CGGATTCGAT CTGTACGTGC GACTCGTCGG GGAGGCCGTG
GAAGCGTTCC GCAGGCATGC CGGTGCCGGT GAGCCCGAGG AGGAGCCCAC TCCCACCGAG
GTGCGGGTGG ATCTGCCCGT GGACGCGCAC ATCCCGCACG ACTACGTGCC GGGCGAGCGA
CTGCGGTTGG AGGCGTACCG CAAGATCGCG GCGGCGCCCG ACGCCGAGGG ATTGGACGCG
GTGCGGGAGG AGCTGGTCGA CCGCTACGGG AAGTTGCCCG CGCCGGTCGA ACGGCTGCTC
GCGGTGGCGG CGTTCCGGCA GGTGTGCCGG GAGGCGGGGG TCACCGAGGT GACGCTGCAG
GGCAACAACA TCCGTTTCAC CCCGTTGCAG CTGGCCGATT CGCAGTTGGT GCGGTTGAAG
CGGCTGTATC CGAGGGCGGT GTTCAAGGCG GTGACCAACA CGGTTTCCGT TCCGCGGCCG
ACCGAGGGGC CCGCGGGGGG CCGCATCGGC GCGCCCGTGC TGCGGGACGA GCCGTTGTTG
GATTGGTGCA CCACGCTCAT CCGCTCGTTG ACGCGGACGC CGACGGCCGT CAGCGCGTGA
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| Protein sequence | MTDSPNGSSS GALSGLLSAL LSDPALRGVV EQAGAPLLDL DGSTATHQLV VAALAADRGA
GRPVLAVTPT GRQAEELTAA LRSLLGENLV ADFPSWETLP HERLSPRADT VGKRLEVLRR
LAQPDHGGLR VVVATVRSLI QPMAPGLGGL HPVELRVGQE SDFEAVLDQL VELAYTRVDM
VEKRGEFAVR GGILDIFGPT AEHPHRIEFW GDEVSEIRAF AVSDQRSLPG EVTEVIAPPC
REILLTPDVK ARAAELARTH ADNAQLSEML TKLADGVPCE GMEALIPVLC EGELQLLTDA
LPEGTHVVLI EPEKSRARAA DLVRTGQEFL EASWMSAADG GEAPLDLGAS AYRDLDEVRA
HATETNRCWW TLSQLTSESG AHHVAIDSAP AYRGELERVA TDLRAHTASG GAAVVVVAGA
GTAKRAVDQL SGAEVPATLA TEGLTEEPKP GVVTVTCGGI SDGFVAPGSA LVVLSEADIT
GRGATAGRSN VDLNTKMPSR RRNAVDPLAL KSGDYVVHDQ HGIGRFVEMV RRTVGGATRE
YLVIEYAPSK RGHPGDRLFV PTDQLDEVSR YVGGETPTLN KMGGADWKKT KARARKAVKE
IAAELVQLYA ARQAAPGHAF SPDTPWQREL EDAFPFTETA DQLAAIDEVK RDMERDVPMD
RVICGDVGYG KTEIAVRAAF KAVQDGKQVV VLVPTTILAQ QHLATFSERM RSFPVTIKGL
SRFTDPHEAE QVINGLADGE VDIVIGTHRL LQSNVRYKDL GLVIVDEEQR FGVEHKEHIK
ALRTHVDVLT MSATPIPRTL EMSMAGIREM STILTPPEDR HPILTYVGAY DDKQVAAAIR
RELLRDGQVF YVHNRVSSIE RAARRLRELV PEARVVTAHG QMNEHRLEQI IQGFWEREYD
VLVCTTIVET GLDISNANTL IVEHADQLGL AQLHQLRGRV GRGRERGYAY FLYPADKPLT
ETAHDRLATI AQNTELGAGM AVAMKDLEIR GAGNILGAEQ SGHIAGVGFD LYVRLVGEAV
EAFRRHAGAG EPEEEPTPTE VRVDLPVDAH IPHDYVPGER LRLEAYRKIA AAPDAEGLDA
VREELVDRYG KLPAPVERLL AVAAFRQVCR EAGVTEVTLQ GNNIRFTPLQ LADSQLVRLK
RLYPRAVFKA VTNTVSVPRP TEGPAGGRIG APVLRDEPLL DWCTTLIRSL TRTPTAVSA
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