| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_31980 |
|---|
| Symbol | |
|---|
| ID | 8388522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3468099 |
|---|
| End bp | 3469460 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644977225 |
|---|
| Product | serine phosphatase RsbU, regulator of sigma subunit |
|---|
| Protein accession | YP_003134998 |
|---|
| Protein GI | 257057166 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0585203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.149129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AGGTGTGCGC CGCGCTGCGC AGGATGTTGG GCGACCGGGA GTTGTCCGAG
GACGTGTGGC AGCGGGTGAG GGGTGAACTC GAACAGGGTT CCTTGGCTGA CTCGCTGCGT
ACGGTGTTCC GCGCTTTTGT GGACATTATG GACGAACGGG ATCAGGAACT GCGTTGGTAT
CACACGGAGT TGGATCAGAC CAATGCGGGT CTGCTGGCTT TGCACGCCGA GGTCGACCGG
CAACGGCGAC GTACGTCGTT CCTTGATCAG GTATCACGAG CGGCGGCGAC GTCGTTGGAT
TCCACGCAGC TGCTGGAAGA GGTCACCGGG TTGGTGCGGG AGCACAGGTT CGCCGACACC
ATGCGCGTGT GGACGCTGAC CGAGTACGGA CTGAGCTGTG TGGACGGATC GGACGACGAA
CCGGACCGGG CCACCCGGCG GGCGATGCGG ACTCGGGAAG CGGTGCGGGG CGGTCCGAAC
CGGGTGAGTG TCCCGTTGAC GGCCGGTCCT TATGTGTTCG GGGTGTTCGA CCTGCATCGG
GAGCTCGCGG AGTTCACCGA TGACGACGTG GGGTTGGCCC AGGGTGTCGC CGATCGCGTG
GCGGTGGGAC TGCGGAACGC CAACGAGTAC GAGCGGGAAC ACGAACTGGC CCAGCGGCTG
CAACGGGCGA TGCTGCCGAC GCTGGAGTCG TTACGCGACC TCGACCTCGT CGCCCGCTAT
CGATCGGCGA CCAGCGGCAT CCACGTCGGC GGTGATTGGT ACGACTCGGT GACCCGATCC
GATGGCACGG TGGTCCTCAC GGTGGGTGAT GTGACCGGGC ACGGTGTCGA TGCCGCGGTG
GTGATGGGAA AGCTGCAGAA CTCCCTGCGC GCCTACGCCG TGGAAGGTCA CAGCCCCGCG
ACCTCACTCC GGCTGGTGCA CCACCTGCTG CGCGGCTCGG ACACGCCGCT GTTCGCCACG
GCCGTGATGG CCGAGGTGGA ACCCGCGACG GGCATGCTGC GTTGGGCGAG CGCGGGTCAT
CCACCACCAC TTTTGCGGGA GTCACGTAGT GCCGTGACGT ACCTGGAGGC GGAGCACGCG
CCGATGCTCG GGGTCTACCT GCCGTCGGAG CTGGAGTTCC CCGAGCACGA ACGCAGACTC
TCCCCGGGGT CGTTGGTCGC GCTTTTCACC GACGGATTGA TCGAGCGCCG GACCAGTGAC
CTGGACACGG GCATGGAACG GTTGAAGGAG GCCTTCCGCT CGTGTGAGGC CGACACCCTC
GACGGCACGG CCGAATACGT GCTGAGGACG ATGCTGGACG GCAGCGATCA CGACGACGAC
GTGTGTCTGC TCATGTGTCA CTGGCCCGGC CGGGGGGCGT GA
|
|---|
| Protein sequence | MTDEVCAALR RMLGDRELSE DVWQRVRGEL EQGSLADSLR TVFRAFVDIM DERDQELRWY
HTELDQTNAG LLALHAEVDR QRRRTSFLDQ VSRAAATSLD STQLLEEVTG LVREHRFADT
MRVWTLTEYG LSCVDGSDDE PDRATRRAMR TREAVRGGPN RVSVPLTAGP YVFGVFDLHR
ELAEFTDDDV GLAQGVADRV AVGLRNANEY EREHELAQRL QRAMLPTLES LRDLDLVARY
RSATSGIHVG GDWYDSVTRS DGTVVLTVGD VTGHGVDAAV VMGKLQNSLR AYAVEGHSPA
TSLRLVHHLL RGSDTPLFAT AVMAEVEPAT GMLRWASAGH PPPLLRESRS AVTYLEAEHA
PMLGVYLPSE LEFPEHERRL SPGSLVALFT DGLIERRTSD LDTGMERLKE AFRSCEADTL
DGTAEYVLRT MLDGSDHDDD VCLLMCHWPG RGA
|
|---|
| |