| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_31680 |
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| Symbol | |
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| ID | 8388492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3434252 |
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| End bp | 3435856 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644977195 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003134968 |
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| Protein GI | 257057136 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.130775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGATA GCGGCGAACA TAAGCTCGCG AAGGACAGTC CTAAGATCAA TCGCGTCACG
TTCGTCGGAG CGTCGTCGAT CATCCTCGTG ATCGCCCTGT GGGGGATCAT CGCTCCGGAG
AACGCCGCGG AAACCATCGG TGTCCTCGTC AACTGGGTTT CGGAAGGACT CGGCTGGTAC
TACATCCTGC TCGCCACGGT GATACTCGTG TTCGTGGTGA TCGTGGCCGT GTCCAAGTAC
GGCAAGATCA CCCTCGGGCC AGTGGAGTCC AAACCGGACT ACAACCTCTT CACCTGGGGT
GCGATGCTGT TCGCCGCGGG CATCGGCATC GACCTCATGT TCTTCTCGGT CTCCGAGCCG
GTGACGCAGT ATCTGCAGCC CCCGCAGGTG GAACCGGAGT CGCTCGAAGC CACCCGGGAC
GCCGTGGTGT GGGCGCTGTT CCACTACGGT ATCACCGGCT GGGCCATGTA TGCGCTCATG
GGAATGACGC TCGGGTACTT CGCGTTCCGG CGCGGCCTGC CGTTGGCCGT CCGAGCGGCG
CTGTACCCGA TCATCGGTAA GCGCATCCAC GGCCGTCCCG GCCACGCGGT GGACATCGCC
GCCGCCCTGG GCACGGTGTT CGGCGTCGCG ACCTCGTTGG GTATCGGCGT GGTGCAGCTG
AACTTCGGGT TGAACTTCAT GTTCGGCATC CCGCAGGGCA CGGCGGCGCA GATCGGGCTC
ATCGTGCTGG CGGTGCTGAT GGCCACGATG TCCGCCGTGT CCGGTGTCGA CAGGGGGATC
CGGCGGCTGT CGCAGCTCAA CGTGATCCTC GCGGCGGCGT TGATGCTGTT CGTCCTGTTC
GCCGACAACC CGGTGTACCT GCTGGACGCG TTGGTGCTCA ACATCGGCGA CTACATCGCC
AACTTCGGCG ACATGACGCT GAACACCTTC GCGTACGACC GGCCCACCGA GTGGCTCAAC
TCCTGGACGC TGTTCTTCTG GGCCTGGTGG ATCGCATGGG CACCGTTCGT CGGCCTGTTC
CTCGCGCGCA TCTCGTGGGG ACGCACGATC CGGGAGTTCG TGGCGGCGAC GCTGATCATC
CCGTTCATGT TCACGGCCAC GTTCCTGTCG GTGTTCGGCA ACAGCGCGCT GCGCCTGGTG
CGAGAGGGGA ACGAGGAGTT CGGACAGGTC GCGGCGAACA CACCGGAACA GGGCTTCTAC
ACGCTGTTGG CGCAGTACCC GGGCGTGACG TTCAGCGCGG GCCTGGCCAC GGTGGTCGGG
TTGCTGCTTT ATGTCACCTC CGCCGACTCG GGCGCTCTGG TGTTGGGAAA CCTGACGTCG
AAACTGTCGA CGTCCACCGC CGAGGCCACG TCGGGGGTCC GGGTGTTCTG GTCCGCCGTC
ATCGGTGTGC TGACCTTGGC GATGCTCATC GTCGGCGGGG TCGGGACGCT TCAGAACGCC
ACCATCATCA TGGGGCTGCC GTTCTCGGTG GTGATGGTGC TGGTGATGTG GGGCTTGTAC
AAGGCGCTAC GCCAGGAAGG ACAGGGCACC GACCAGTTCC TGCCGGCGGG TGGGTCCGAG
GGCAAGTCCG ACGCCGAGTC CGAAAGGGTC GCCGCGAAAC GGTGA
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| Protein sequence | MSDSGEHKLA KDSPKINRVT FVGASSIILV IALWGIIAPE NAAETIGVLV NWVSEGLGWY
YILLATVILV FVVIVAVSKY GKITLGPVES KPDYNLFTWG AMLFAAGIGI DLMFFSVSEP
VTQYLQPPQV EPESLEATRD AVVWALFHYG ITGWAMYALM GMTLGYFAFR RGLPLAVRAA
LYPIIGKRIH GRPGHAVDIA AALGTVFGVA TSLGIGVVQL NFGLNFMFGI PQGTAAQIGL
IVLAVLMATM SAVSGVDRGI RRLSQLNVIL AAALMLFVLF ADNPVYLLDA LVLNIGDYIA
NFGDMTLNTF AYDRPTEWLN SWTLFFWAWW IAWAPFVGLF LARISWGRTI REFVAATLII
PFMFTATFLS VFGNSALRLV REGNEEFGQV AANTPEQGFY TLLAQYPGVT FSAGLATVVG
LLLYVTSADS GALVLGNLTS KLSTSTAEAT SGVRVFWSAV IGVLTLAMLI VGGVGTLQNA
TIIMGLPFSV VMVLVMWGLY KALRQEGQGT DQFLPAGGSE GKSDAESERV AAKR
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