Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_31440 |
Symbol | |
ID | 8388468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3407276 |
End bp | 3410236 |
Gene Length | 2961 bp |
Protein Length | 986 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644977171 |
Product | DNA repair ATPase |
Protein accession | YP_003134944 |
Protein GI | 257057112 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.651152 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTGC ACAGGCTGGA GGTTTGCGCG TTCGGCCCGT ATGCGGGACG CGAGGTCGTC GACTTCGACG CTTTGGGCGC CGACGGACTG TTCCTGCTGC ACGGTGACAC GGGTGCGGGG AAGACCACCC TGCTCGACGC GGTGGCGTTC GCGCTGTTCG GAGCGGTGCC GGGAGCCCGT GGGCAGGTGA AGCGGTTGCG GTGCGACCTC GCCGACGCCG ACACCCCCAC CGAGGTCGTG TTGGAGCTGA CCGTGCAGGG GCACCACCTG CGGATCGTTC GAAGCCCCGA GTACGAGCGG CCGAAGCGAC GTGGTGAGGG TTACACCACA CAGCCGGCCA AGGCATCCCT GACCTGGCTC AGTCCACCGC CCGACGGGGG GACGGCGGAA GCGGTCACCC GCATCGACGA GGTCGGACGG ATCGTGGAGC GGTTGTTGGG CATGAACGCC CAGCAGTTCT TCCAGGTCGT GCTCCTCCCC CAAGGGGAGT TCGCGAAATT CCTCCGCGCC GACACCACCG AGCGGGAGAA ACTGCTGGAA CGCCTGTTCG GTACGGAGCG ATTCGCCGTG GTCGAGCAAT GGTTCCGCGA TCTGCGGGCC GAGCGGAGAG CGGAACTCGA ACATCGGCGG TCCGGCGTGC GGGACTGGGT GGCCCGGTTG GCCCAGGTGG CGGGGGAGGA GATCCCCGAG GACCCCGACC GGGACTGGGT GGTGACGCTG CAGCGCCGGG CCGCCGCCGA GGTGGACACG GCGCGGCGGG AGGAGTCCGA CGCACGCCTG GCCTGGGAGG AGGCACAAGC CCGACTACAG GAACGCAGGG CTGCGGCGGA ACGACTTCGG CGGGTTCGAG CGGCGCACAC CCGCCTCGCT GAATTGGAGC AACGCTCGGA GGAGCGCGTT CGATGGTCCA CCGAGTTGGA GGCGGCCAGG CGGGCCGCCA CGGTGGCCGA GCTGGTGGCC GAGGCCGAGG CGGGTGAGGA GCAGTACGAC CGGGAGGTCG CGGAAGAGGA GGCGGCGGCA CGGATCTGCC GCGAGCTCGG GTTCACCGAA CTCGATCTCG ATGTGGCCGA GCTGCGTGAT CGCGCGGGTG CCCTACGCGA GGAAGCCGGC GGACTGTCCG GATTGGTCGA TCAGGCACAA CGGCAACACG CCGACCGGCA GCGTCTTGAC GTACTCGACA AGCTGATCGC CGACGACAAG GAACGAATCG CGATCGTCCA GTCGAAACTG GACGGTCTTC CTGAGCGTGT GGGCGAGTTG CTGCGGCAAC GGGAACTGGC TGTGGAGGCT GAGGCCAAGC TCGAGGGGGT ACGTGCGAAG GAAGCGGAAT TGACGGCATT GCTCGTCGAC GCGGAGGCGC TGCCGGAACT CGAACGCGAG TTGGAGGACG CCCGCGCGGC CGAGAACACG GCCTTCGCGG CCTACAACGA AGCCAAGCAG GCCTTGCTCG ACCTGCGAGA GCGGCGACTC GCGGGGATGG CGGCCGAGCT GGCGGCTCAG CTCGCGGCGG GAGAACCGTG CCCGGTGTGC GGGTCGGAGC AACACCCCGA GCCCGCCGTG GCGACCGATG ACGCGGTGAG TGAGGACGAG GAACGAGTCG CGGCCGAGCG CGAAGCGGAG GCCGAGCGGC GTCGGGATGA GGCCACGGCG AAGCGGTACG AGGCGCAGCG GCGTCGGGAT GCCGCCGCCC AACGTGTGGG GGAGCGTCGG GTCGACGAAC TCGCCGAGGA ACTCGCGCAA GTGCGTGATG AACGCGATCG GCTCGGTGAA CACGCCGGGA AGTCGGAGGC GTTCGCGGCC TCGGTGGAGG CGGCGAAGAA AGAGGAACAG TCCCTTATGG CCGAACGGGC CTCGTGCGAG CGGTCGTTGA GCGAGAACGA GGCCGAGCGG AGTCTGTTGG CTGAACGGAT CGTGGAACGA GAACGTGCCC TTGCCGAAGC GCGGGGGGAG TTCCCTGATG TTTCGGCCAG GCGGGATCAT CTGCTGGCAC TGGGGCGAGC GGTGGACCGG TTGGCCGACG CGCGCACCGC GGTCAGCGCC GCGGGGCGGC AGCGGGACGA ACGACGCCGG TCGATCGCCG AAGCCGCTCG GCGCGCCGGA TTCGCCTCCG TGGACGAGGC CCTGGCGGCA GCGCGTCCTT CGGAGCGGAT CGCCGAACTG GAACGGTTGA TCACGGATGC CGATGCCGAG GAGGCCGCGG CACGAGGTGT GCTCGACGAA CCAGACCTCG CCGGAGTGTC CCCGGACGAC GAAGTGGACG TCGACTCGGC GGAAGCGGCG GCACAGGAAG CGCAGAAGCG CTCCGAAACG GCGGTGGCAG CCGTGCACGC GGCCGAACGG ACCGCACGCG AGCTGAACAC GTTGGCGCAG CGGTTCGAGG CCGCGTTGGC CGAGCTCGAG CCCGTCGAGT GGGAGTTCGC CGAACTCGAT GCCCTCACCG ATGTCGTCAA CGGTCGAGGT CAGAACGCTC GCCGCATGTC CTTGCGGTCA TATGTACTCG CGGCGAGGTT GGAGGAGGTG GCCGTCGCCG CCACCGCGCG ACTGCGTTCG ATGAGTCAGG GCCGGTACTC GTTCGTGCAT TCCGACGCGG CAGGAAGCCG GGGTACCCGT GGCGGACTCG GGCTCGACGT GCTCGACGAC TATTCCGGCA TGGTCCGCCC CGCCAAGACG TTGTCCGGAG GCGAGTCGTT CCTCGCCTCG CTGTCGCTGG CTCTCGGTCT CGCCGATGTG GTGGCGGCCG AAACGGGTGG TGCGCTGCTT GACACGTTGT TCGTCGACGA GGGGTTCGGG ACGTTGGACA GCGAGACCCT CGACGTGGTG ATGGGCGTGC TGGACGAGTT GCGCGCGGGT GGTCGCGTGG TGGGCTTGGT ATCGCATGTG GAGGAACTAC GACAGCGGGT TCCCACGCGG CTACGGGTAC GCAAGTCGCG CAGCGGCTCA ACCCTGGTGA TGGGCGGTTG A
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Protein sequence | MRLHRLEVCA FGPYAGREVV DFDALGADGL FLLHGDTGAG KTTLLDAVAF ALFGAVPGAR GQVKRLRCDL ADADTPTEVV LELTVQGHHL RIVRSPEYER PKRRGEGYTT QPAKASLTWL SPPPDGGTAE AVTRIDEVGR IVERLLGMNA QQFFQVVLLP QGEFAKFLRA DTTEREKLLE RLFGTERFAV VEQWFRDLRA ERRAELEHRR SGVRDWVARL AQVAGEEIPE DPDRDWVVTL QRRAAAEVDT ARREESDARL AWEEAQARLQ ERRAAAERLR RVRAAHTRLA ELEQRSEERV RWSTELEAAR RAATVAELVA EAEAGEEQYD REVAEEEAAA RICRELGFTE LDLDVAELRD RAGALREEAG GLSGLVDQAQ RQHADRQRLD VLDKLIADDK ERIAIVQSKL DGLPERVGEL LRQRELAVEA EAKLEGVRAK EAELTALLVD AEALPELERE LEDARAAENT AFAAYNEAKQ ALLDLRERRL AGMAAELAAQ LAAGEPCPVC GSEQHPEPAV ATDDAVSEDE ERVAAEREAE AERRRDEATA KRYEAQRRRD AAAQRVGERR VDELAEELAQ VRDERDRLGE HAGKSEAFAA SVEAAKKEEQ SLMAERASCE RSLSENEAER SLLAERIVER ERALAEARGE FPDVSARRDH LLALGRAVDR LADARTAVSA AGRQRDERRR SIAEAARRAG FASVDEALAA ARPSERIAEL ERLITDADAE EAAARGVLDE PDLAGVSPDD EVDVDSAEAA AQEAQKRSET AVAAVHAAER TARELNTLAQ RFEAALAELE PVEWEFAELD ALTDVVNGRG QNARRMSLRS YVLAARLEEV AVAATARLRS MSQGRYSFVH SDAAGSRGTR GGLGLDVLDD YSGMVRPAKT LSGGESFLAS LSLALGLADV VAAETGGALL DTLFVDEGFG TLDSETLDVV MGVLDELRAG GRVVGLVSHV EELRQRVPTR LRVRKSRSGS TLVMGG
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