Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_31210 |
Symbol | |
ID | 8388445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3389289 |
End bp | 3390362 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644977150 |
Product | ABC transporter periplasmic binding protein, thiB subfamily |
Protein accession | YP_003134923 |
Protein GI | 257057091 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.194613 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.348603 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCCAGG GACCGGGCCA TGTGTCAACG TCGTTACGCG CGGCGATCGC GCTGCTGTCG GCCGGTGCCC TCACGGCGGG TTGCACGGTT ATCGGTACCG AGGACGAGTC GGCGGACGAG CCGGTGACGG TCACTCTCGT CACGCACCAG TCCTGGGCCG TTCCGCAGGA AGTGGTGGAC GCCTTCGAAC AGCGTGCGGG CGTGCGTATC GAGGTCCGCA AGGAAGGCGA CGCGGGCGAG CTGACGAACA AGCTCGTGCT GACCAAGGAC AACCCGATCG CGGACGTGGC GTACGGCATC GACTCGACGT TCGCGTCCAG GGCGTTGTCG GAGGGGGTCT TCCAGCCGTA CACCTCTCCG GAGGCCGACC GAGGACCGCA GCGGTACGCC GTCGACCGGG AACAGCGATT GTCGGCGGTG GACGTCGGTG ACGTGTGCGT CAACATCGAC AGCGAGTGGT TCGCCGAGAA CGACGTGCCC GAACCCACGG GGCTCGACGA CCTCACCGAC CCGATCTACG AGGACCTGTT CGTGGTGCCG AGCCCGGCCA CGTCGTCTCC GGGGTTGGCC TTCCTGTTCG CCACGGTCTC GGAATACGGC GAGGACGGCT GGACCGACTA CTGGGGCGAC CTGAAGGACA ACGGGGTGAA GGTCGTCAGC GGCTGGACCG AGGCGTACAC GCAGGAGTTC TCCGGTTCGT CCGGGGAGGG GGAGCGGCCG ATCGTGCTGT CCTATGCGTC GTCACCCGCC GCCGAGATCG GACAGGACGG CAAGCCGCGC ACCAAGGCGC TGCTCGACAC CTGCTATCGC CAGGTCGAGT ACGCGGGCGT GCTGGCGGGG ACCGAACATC CCGACGAAGC GGGTAAGGTG ATCGACTTCC TGTTGTCGCC CGAATTCCAG TCCACCCTCC CGGAGAACAT GTACGTGTAC CCCACCCGGG AAGGCGTGCC CCTGCCCGAG GAGTGGGAGC GGGCCGCGCC GATGCCGCGC GAGTCGATTT CGCTGCCCGG TGAGCAGGTC CAGGAGAACC GCGAGCGCTG GATCTCGGAA TGGCGCGAGC TACTCGAGGG CTGA
|
Protein sequence | MGQGPGHVST SLRAAIALLS AGALTAGCTV IGTEDESADE PVTVTLVTHQ SWAVPQEVVD AFEQRAGVRI EVRKEGDAGE LTNKLVLTKD NPIADVAYGI DSTFASRALS EGVFQPYTSP EADRGPQRYA VDREQRLSAV DVGDVCVNID SEWFAENDVP EPTGLDDLTD PIYEDLFVVP SPATSSPGLA FLFATVSEYG EDGWTDYWGD LKDNGVKVVS GWTEAYTQEF SGSSGEGERP IVLSYASSPA AEIGQDGKPR TKALLDTCYR QVEYAGVLAG TEHPDEAGKV IDFLLSPEFQ STLPENMYVY PTREGVPLPE EWERAAPMPR ESISLPGEQV QENRERWISE WRELLEG
|
| |