Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_30650 |
Symbol | |
ID | 8388389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3326599 |
End bp | 3328203 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644977094 |
Product | choline dehydrogenase-like flavoprotein |
Protein accession | YP_003134867 |
Protein GI | 257057035 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.104777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCCGC TCTCCCGTAG GCGTCTGCTC GGCCTGCTCG CGGTGAACAC GGCGAGCGCC CTCGGGCTGG GCACCATCGC CACGCCATCC GCTGCGGCAG CGAGTCGCCG GGACTTCTCG CCCGCCGTGG TGGTCGGTAC CGGCTACGGC GCCGCCGTGA CGGCGTTGCG GCTCGGGCAG GCGGGCATCC CCACCGTGAT GCTGGAGATG GGCCGACTCT GGGACACGCC GGGCGACGAC GGCCGTGTCT TCTGCGACAT GCTCAACCCC GACCGTCGCG CCATGTGGCT GGCCACCCGC ACGCAGATGC CGCTGTCGTC GTTTTTGTGG CTCGACATCG ACCGCCGCAT CGAGCGCTTC ACCGGCGTGC TCGACTGCGT CCACCACGGT GACATCTCGG TCTACGTCGG ACGCGGCGTC GGAGGTGGTT CGCTCGTCAA CGGTGCGATG GCGGTCACGC CGAAGCGAGC GACGTTCGCC GAGGCGTTCC CCGACGTCGA CAGCGACGGG ATGTACCGAA CCTATTTCCC CCGTGCCGCG GCGATGCTGG GTGTCAACCA CATCGATCCC GCGTGGTTCG AGACCTGCGA GTCGTACCGC TACGCGCGTG TGTCCCGAGC CCATGCGCAC AACGCGGGTC TGACCACGAC GTTCGTGCCC AGCGTCTACG ACTTCGCTCG GATGCGGCGT GAGGAGGCGG GGGAGGTACC CCGGTCGGCG CTGGCCGCCG AGGTGATCTA CGGCAACAAC CACGGCAAGC GCTCATTGGA CAAGACCTAT CTCGCCGACG CACTCGGGAC GGGATGTGTG TCGATCCGGA CGCTGCATCA CGTGCGGGCG ATCGAACAGG ATGCGGACGG CACGTACGTG CTCACCGTCG ACGAGCTCGA TCTCGACGGA ACCCGTGTGG CCACACGGCA ACTCGGGGCG CGATACCTGT TCCTCGGCGC GGGCAGTCTC GGTTCGACCG AGTTGTTGCT CCGCGCCCGG GACACCGGGG CCCTGCCCGG GCTCAGCCCC CTGATCGGCC GGGATTGGGG GCCGAACGGC AACGTGATGG TGGGGCGCGC GAACCGTCCG CGGGACCGGA CGGGCACCGT GCAGTCGGGA ATGCCCGCGC TCGGCATCGA CGCCTGGGAC GATCCCCGAC ATCCGGTGTT CGCCGAGGTC GCCCCCATGC CGGCGGGTGT GGAGCTGTGG GTGAGCCTGT ACCTGGCCGT CACGAGGAAT CCCGAACGAG GCCTCCTCAC GTACGACGCC GGCTCCGACC GGGTGCGCCT GCACTGGCTA AGCGGGCAGG CACAGCCGTC CGTCGACCAG GCGAAAGCGT TGTTCGACCG CCTCAACGCC GCGAACGGCA CCGAATACCG GTCGGATCTG TTCGGCGACA CCCGCGTGTT CGAAACCCGA CTCACCTATC ACCCGCTCGG CGGGGCCGTG CTCGGCAAGG CGACCGACGC CTACGGCCGG GTGCGGGGAC AGCGCCGTCT CTACGTCACC GACGGCTCCC TGGTGCCCGG CAACATCGGC GTCAACCCAT TCCTCACCAT CACCGCGTTG GCCGAGCGCA ACATCGAGCG GATCCTCGCC GAGGACCTGC GTTGA
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Protein sequence | MRPLSRRRLL GLLAVNTASA LGLGTIATPS AAAASRRDFS PAVVVGTGYG AAVTALRLGQ AGIPTVMLEM GRLWDTPGDD GRVFCDMLNP DRRAMWLATR TQMPLSSFLW LDIDRRIERF TGVLDCVHHG DISVYVGRGV GGGSLVNGAM AVTPKRATFA EAFPDVDSDG MYRTYFPRAA AMLGVNHIDP AWFETCESYR YARVSRAHAH NAGLTTTFVP SVYDFARMRR EEAGEVPRSA LAAEVIYGNN HGKRSLDKTY LADALGTGCV SIRTLHHVRA IEQDADGTYV LTVDELDLDG TRVATRQLGA RYLFLGAGSL GSTELLLRAR DTGALPGLSP LIGRDWGPNG NVMVGRANRP RDRTGTVQSG MPALGIDAWD DPRHPVFAEV APMPAGVELW VSLYLAVTRN PERGLLTYDA GSDRVRLHWL SGQAQPSVDQ AKALFDRLNA ANGTEYRSDL FGDTRVFETR LTYHPLGGAV LGKATDAYGR VRGQRRLYVT DGSLVPGNIG VNPFLTITAL AERNIERILA EDLR
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