Gene Svir_30550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_30550 
Symbol 
ID8388379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3308700 
End bp3309806 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content67% 
IMG OID644977084 
ProductABC-type multidrug transport system, ATPase component 
Protein accessionYP_003134857 
Protein GI257057025 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACG GCAGTGGCCG CATCGCGGTG CAGAACCTCA CCAAACAGTT CGGCGCCGTC 
ACGGCGGTAC AGAACCTCAG CTTCACCGTG GAACCGGGTA GTGTGACCGG CTTCCTCGGG
CCGAACGGAG CCGGTAAGAC GACGACCTTG CGGATGCTAC TCGGCCTCGT CACCCCCACC
GCGGGCACGG CGACCATCAA CGGCAGGCGG CATCACGAAC TCGGCAACCC CGCGCGTGTC
GTCGGTTCGG TGCTGGACAA CGGCAGTTTC CACCCGAAGC GGACAGCACG GAATCACCTT
CGCGTGTATG CGGCGGCCAT CGGTGTCCCC GATCAACGGG TCGACGAGCT ACTGGGGCTG
GTGGGGCTCG CCCCGGCGGC GGACCGGAAG ACAGGTGGCT TCTCCCTCGG TATGCGACAA
CGACTCGCTC TCGCCACCGC TCTGTTGGGC GATCCGCAAG TGTTGGTGCT CGACGAACCC
GCGAACGGCC TGGACCCCGA AGGCATCGCG TGGCTGCGGA ACTTCCTGCG CTCGTTCGCG
GCGCAGGGAC GCACCGTGCT CGTGTCGAGC CACCTGCTGT CCGAGGTCGA GCAGACCATC
GACCAGGTCG TGATCGTCAG CGCCGGGATG ACCCGCTACT ACGGTTCCCT GGAGAACCTG
CGGAAGAGCC AGCAGTCTCG GGTCCTCGTG CAACCCGCCG ATGCCTCCGC GCTGGTGACG
GCCCTGCGGG AAGCCGGCAT CGACAAGGTG GAGCCCACCT CGGACGGTCG GGTGGCGGTG
ATCGACTCCA CCGTGCAGCA GATCGGTGAC ATCGCCGCGA AGGCGGGCAT CGCCGTATAC
GGCATGGAGG AGCAGAAGGC CGACCTGGAA CAGCTGTTCT TCCAGCTCAC CACGCCCCAA
TACAGCGGGG CACCGCTGCC GGGGCAGTTC ATGCCACAGG GGGCGTGGGG CGGAGCGCCG
CAGCCTTATC AGCAGCCGCA GCAGCCCTAC CAGCCGCAGC CCTACCAGCA GCCCGGCCAG
CAATACCCCC AGCAGCAGTA CCAGCAGAAC TACCAGCAAC CCGGTCAAGG ACCGCAGCCC
AACCAGGGCT GGGGAGGTCA GCAGTGA
 
Protein sequence
MHDGSGRIAV QNLTKQFGAV TAVQNLSFTV EPGSVTGFLG PNGAGKTTTL RMLLGLVTPT 
AGTATINGRR HHELGNPARV VGSVLDNGSF HPKRTARNHL RVYAAAIGVP DQRVDELLGL
VGLAPAADRK TGGFSLGMRQ RLALATALLG DPQVLVLDEP ANGLDPEGIA WLRNFLRSFA
AQGRTVLVSS HLLSEVEQTI DQVVIVSAGM TRYYGSLENL RKSQQSRVLV QPADASALVT
ALREAGIDKV EPTSDGRVAV IDSTVQQIGD IAAKAGIAVY GMEEQKADLE QLFFQLTTPQ
YSGAPLPGQF MPQGAWGGAP QPYQQPQQPY QPQPYQQPGQ QYPQQQYQQN YQQPGQGPQP
NQGWGGQQ