| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29930 |
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| Symbol | |
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| ID | 8388317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3233990 |
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| End bp | 3235831 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644977024 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_003134798 |
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| Protein GI | 257056966 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.660333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATTG CGGAGTTGCG CGAACTCGCT GCGGAGCTGG GCATCACCGG CACCACGGGC
ATGCGCAAAG GCGACCTCAT CGCCGCCATT CGTGAGCGCC AGGGCAAGAC GAAGCGGACG
AGGACGACCG CGAAGAGCAG CGGCTCCGCC GGCACGGCTG GTGTGGCCGC CGAAGAAGCG
ACGCTTCCTC TCGACGGCGT GGGCGAAACC AAGGCCGAGC GTGGCGAGGC CAAGAAGGAA
GCCAAACAGA ATGACGCCGA ACGGAGTGCG GACGCTGCTT CGGAGCAGAC CGCTGTGAGC
GGCACGGAGT CCGACAAGGC GGGCGCCGCT GAGCCGAGCA CCAAGGACAC CGGCCAGGAG
AGCAAGTCGT CGTCGACCGA CGCTCAGGAC GAGGGCAGCA GGTCGACCAG GCGTCGTCGG
AGCACTTCCA GCCGAAGCGG AAGTTCGCAG AGCTCGACGG AGACGACTGC TCCGCAGCAG
GACGACGATG CGTCGGGTCA GCGTGCCGAA GGCGACGGCA AGGACGGCAA GAGCAGCGGT
AGCCAGCAGC GTGGCCAAGG CAGCGCGGCT GGGACCCAGC ACAACAACGG CGGTCAGGAC
GACGAGGAAC GCGGCGGCCG ACGGAGCCGG CGCTTCCGGG ACCGTCGTCG CCGGGGTCGG
GGCGAGGGCA GCGGTGGCCC CGAGACCGAG ATCAGGGAGG ACGACGTCCT GCTGCCCGTC
GCGGGCATCC TCGACGTGCT GGAGAACTAC GCGTTCGTGC GGACGTCCGG ATATCTGCCG
GGCCCGAACG ACGTGTACGT CTCGCTGTCG TTGGTGCGTA AGTACGGACT GCGCCGCGGC
GACGCCATCA CGGGTGTGGT GAAGCAGCCG CGCGAGGGCG AGCAGCAGCG GCAGAAGTTC
AACCCGCTCG TGCGGGTGGA CTCGGTCAAC GGGCTCGACC CCGAGGTGGC GAAGAAGCGT
CCCGAGTTCC ACAAGCTGAC GCCGCTGTAC CCCAATGAAC GGCTGCGTCT GGAGACCACG
CCGAACAAAC TCACCACCCG GGTCATCGAC CTGGTGATGC CGGTGGGTAA GGGACAGCGT
GCCCTGATCG TCTCCCCGCC CAAGGCGGGC AAGACGACGA TCATGCAGGA CATCGCCAAC
GCGATCACCA CGAACAACCC CGAGTGCCAC CTCATGGTGG TGCTGGTGGA CGAGCGCCCC
GAAGAGGTCA CCGACATGCA GCGGTCGGTG AAGGGCGAGG TCATCGCCTC CACATTCGAC
CGTCCGCCGT CGGACCACAC CTCGGTGGCG GAACTGTCCA TCGAGCGGGC CAAGCGGCTT
GTCGAGATGG GACACGACGT GGTGGTGCTG CTCGACTCGA TCACTCGCCT CGGTCGGGCC
TACAACCTCG CCGCCCCGGC ATCCGGACGC ATCCTGTCCG GTGGTGTCGA CTCGACGGCC
TTGTTCCCGC CCAAGCGGTT CCTGGGTGCC GCTCGGAACA TCGAGGGGGG CGGTTCGCTG
ACCATCTTCG CCACGGCGAT GGTGGAGACG GGCTCCACCG GTGACACGGT GATCTTCGAG
GAGTTCAAGG GCACGGGTAA CGCCGAGCTC AAGCTCGACC GCAAGATCGC CGAGCGCCGG
GTGTTCCCCG CGGTGGACGT CAACCCGTCG GGTACCCGTA AGGAAGAGCT GCTGCTCTCG
CCCGACGAGC TGGCGGTGAC CCACAAGCTG CACCGGGTGC TGCACGCTCT GGACTCGCAA
CAGGCCATCG ACCTGCTGCT GGACCGGCTG CGGAAGACGA AGACCAACGC CGAGTTCCTG
ATGCAGGTCT CCAAGAACAT GCCTGGTCCG GACGAGAACT GA
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| Protein sequence | MVIAELRELA AELGITGTTG MRKGDLIAAI RERQGKTKRT RTTAKSSGSA GTAGVAAEEA
TLPLDGVGET KAERGEAKKE AKQNDAERSA DAASEQTAVS GTESDKAGAA EPSTKDTGQE
SKSSSTDAQD EGSRSTRRRR STSSRSGSSQ SSTETTAPQQ DDDASGQRAE GDGKDGKSSG
SQQRGQGSAA GTQHNNGGQD DEERGGRRSR RFRDRRRRGR GEGSGGPETE IREDDVLLPV
AGILDVLENY AFVRTSGYLP GPNDVYVSLS LVRKYGLRRG DAITGVVKQP REGEQQRQKF
NPLVRVDSVN GLDPEVAKKR PEFHKLTPLY PNERLRLETT PNKLTTRVID LVMPVGKGQR
ALIVSPPKAG KTTIMQDIAN AITTNNPECH LMVVLVDERP EEVTDMQRSV KGEVIASTFD
RPPSDHTSVA ELSIERAKRL VEMGHDVVVL LDSITRLGRA YNLAAPASGR ILSGGVDSTA
LFPPKRFLGA ARNIEGGGSL TIFATAMVET GSTGDTVIFE EFKGTGNAEL KLDRKIAERR
VFPAVDVNPS GTRKEELLLS PDELAVTHKL HRVLHALDSQ QAIDLLLDRL RKTKTNAEFL
MQVSKNMPGP DEN
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