| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29860 |
|---|
| Symbol | |
|---|
| ID | 8388310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3224575 |
|---|
| End bp | 3225684 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644977017 |
|---|
| Product | predicted PLP-dependent enzyme possibly involved in cell wall biogenesis |
|---|
| Protein accession | YP_003134791 |
|---|
| Protein GI | 257056959 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGC TGGTCTGGGA CTACCTGCAC GAATATCGCG ACGAACACGA CGACATCATC
GACGCCGTCG AGACGGTCTT CTCCTCCGGT CGCCTCGTCC TGGGACGAAG TGTCTCCTCG
TTCGAGGCGG AGTTCGCGGA CTACCACGGG GTGTCCCACT GCGTCGGTGT CGACAACGGC
ACCAACGCGA TCCGGCTCGC GCTTCAGGCC ATGGGAATCG GCAAGGGCGA CGAAGTGATC
ACCGTGTCCA ACACGGCGGC CCCCACGGTC GTGGCCATCG ACGCGGTCGG GGCCACCCCC
GTGTTCGTCG ACGTCGACCC CGACACGTAC CTGATGGACG TCGAGCAGGT GGAAGCCGCG
ATCACGCCAC GGACCCGGTG TCTGCTGCCG GTCCACCTCT ACGGCCAGTG CGTCGACATG
GCCCCGCTCC AGCGGTTGGC CGACAAACAC GACCTGCTCA TCCTGGAGGA CTGCGCGCAG
GCGCACGGCG CCCGTCACCA CGGCCGGGTG GCCGGGTCCA TGGGGACGGC GGCGGCGTTC
TCCTTCTACC CCACCAAGGT GCTCGGCGCG TACGGCGACG GTGGTGCCAC CATCACCGAC
GACCCCTCCA TCGACGCCAA CCTCCGCCGT CACCGTTACT ACGGGATGGA AAAGCGGTAC
TACGTCGTCG AAACGCCGGG ACACAACTGC AGGCTCGACG AGGTGCAGGC CGAGATCCTA
CGGCGCAAAC TGCGCAGGCT GGACACCTAC GTCAAGAACC GGCAGGCCGT CGCCGACCGC
TACGTCGAGG CGCTGTCCGA CACCGAGCTC GTGCTGCCCA CGACCGCCGA GGGCAACACC
CACGTGTACT ACGTCTACGT CGTACGCCAT CCCCGCCGGG ACGACATCCT CGAGGCGTTG
CAGGCCTACG ACATCCAGCT CAACATCAGC TATCCGTGGC CGGTCCACAC GATGACGGGC
TTCGCTCACC TCGGGTACAC CGAGGGCAGC CTGCCGGTCA CCGAGTCGGT GGCGAAGGAG
ATCTTCTCCC TGCCGATGTA CCCGTCGTTG CCGCGCGAGA CCCAGGAGAA GGTCATCGAC
GCCCTGCGAT CGGTGCTGGC CGCGCTCTGA
|
|---|
| Protein sequence | MPTLVWDYLH EYRDEHDDII DAVETVFSSG RLVLGRSVSS FEAEFADYHG VSHCVGVDNG
TNAIRLALQA MGIGKGDEVI TVSNTAAPTV VAIDAVGATP VFVDVDPDTY LMDVEQVEAA
ITPRTRCLLP VHLYGQCVDM APLQRLADKH DLLILEDCAQ AHGARHHGRV AGSMGTAAAF
SFYPTKVLGA YGDGGATITD DPSIDANLRR HRYYGMEKRY YVVETPGHNC RLDEVQAEIL
RRKLRRLDTY VKNRQAVADR YVEALSDTEL VLPTTAEGNT HVYYVYVVRH PRRDDILEAL
QAYDIQLNIS YPWPVHTMTG FAHLGYTEGS LPVTESVAKE IFSLPMYPSL PRETQEKVID
ALRSVLAAL
|
|---|
| |