| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29410 |
|---|
| Symbol | |
|---|
| ID | 8388265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3182737 |
|---|
| End bp | 3183462 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644976972 |
|---|
| Product | amino acid ABC transporter membrane protein |
|---|
| Protein accession | YP_003134746 |
|---|
| Protein GI | 257056914 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.988146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATGACA TTCCGACCCT GCTCGACTGG ACAGACAACC TCGTTCGCGG ACTCGGCATC
ACACTGCTCG TCACGGCTCT CGGCACAGTT CTCATGCTGC TGGTTTCGGT ATTCCTGGGC
CTGTTGGCCC GTTCGTCGAA TCTGCTCTCG CGTGGTTCCG CCAGAGTCGT GATCGAGTTC
TTCCGTGGGA CCTCACTACC CATCCAACTG TGGTGGCTGT TCTTCGCCCT GCCGCTGTTG
GGGATCAAAT TCGATCCGAT TCTGGTGGGT GTATTGGCCT TCGGACTGAA TTACGGCGCA
TACGGAGCCG AGGTCGTCCG CGGATCACTC GAAGCCGTGC CCCGCCCCCA GTGGGAGGCC
GCGGTCGCAT TGAACCTGTC CCCCACACAA CGCATGACAC GGGTCGTCTG GCCGCAGGCG
ATCGCGCTGA TGATCCCGTC GATGAACAAC CTGTTCATCC AGCTCCTCAA GAGCACCCCG
CTGCTCTACA CGATCTCGCT GGTCGACCTG ATGACCATGG GCGAGAGCTT CCACGAGGCC
GGTGGCGATC GGACCCTCAT CTACCTCGTG CTGATGGCGA TCTACTTCGT GCTCGCCTAC
GCCGTGACAC TTCTGTCCAA TATGGCCGAA GTCGCCGTCA AGGCGAGGCT CGGCAGGCAC
GAGGGCCTCC GCAGCGTGTT CCGACTCCGC AAGCCCGTCC CCCAGGAAGA GGTGACGATC
CGATGA
|
|---|
| Protein sequence | MNDIPTLLDW TDNLVRGLGI TLLVTALGTV LMLLVSVFLG LLARSSNLLS RGSARVVIEF
FRGTSLPIQL WWLFFALPLL GIKFDPILVG VLAFGLNYGA YGAEVVRGSL EAVPRPQWEA
AVALNLSPTQ RMTRVVWPQA IALMIPSMNN LFIQLLKSTP LLYTISLVDL MTMGESFHEA
GGDRTLIYLV LMAIYFVLAY AVTLLSNMAE VAVKARLGRH EGLRSVFRLR KPVPQEEVTI
R
|
|---|
| |