Gene Svir_29290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_29290 
Symbol 
ID8388253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3171114 
End bp3171902 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content72% 
IMG OID644976960 
ProductPeptidyl-tRNA hydrolase PTH2 
Protein accessionYP_003134734 
Protein GI257056902 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.820939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.179625 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATCG CCGACGGTCC CCACGAACCC GTCCTGGCCC CTGTGGCCGC GCGTTACGCG 
TGGTGGCTGG GACTGCCCGC CCATCGCACC GCGGAGCGGG ACGTGCCGCC CGAACAGGTG
TGGGCGATGC CGGTGGTGTT ACGCATGGAG AAGACGCGGC CGCCGTCGCG GACGTCGTTG
TTGGAGGCCG CTGCCAGCGC TGCTCTCGCC GTATGCCTCG ACGACGAGGC TCGTCCCGGT
GGTGCCTGGT ACGAACCGCT GTACACCTGG ACCTCGGGCC ACATCCGTAA GGTGGCGCGC
CGGGCGCGGG GCGCGCATTG GGAGGCGGTG CAGCGGCTGC CGGGGGTGAC CGTCGACGTG
GCCGGTGCGC AGGCCAGGGC GCTGGTGCCC TGTCGGGTCG GTGACCTTCC CCGGGAAGTC
GCGCGGCTGC AGATCTCCGG TAGTGACCTC CCCGCTGACG ATCCGGGGCC ACCCCCGGAC
GACCGGCCGG TGCTGTTGCT CAACCCCCGG GTCGCGATGT CGGCGGGTAA GGCGGCCGCG
CAGGTCGGGC ACGCCACGAT GTTGCTCGCG GCGTTGCTGG ACACCCCGGA CCTCACCGTA
TGGGCGATGC GGGACTACCG GTGCGCGGTG CGGGTCGCTG ATCAGGACTT CTGGGACGAG
GGTGTCGCCG CGGTGTCGGA CCCACAGCGG GCGTGGGGCG AACACGGTTT GGTGGCCGTC
CGCGATGCCG GTTTCACCGA GGTCGAGCCG GGCACCGTCA CCGTGTTGGC CCGCTGGTCC
CGATCCTGA
 
Protein sequence
MTIADGPHEP VLAPVAARYA WWLGLPAHRT AERDVPPEQV WAMPVVLRME KTRPPSRTSL 
LEAAASAALA VCLDDEARPG GAWYEPLYTW TSGHIRKVAR RARGAHWEAV QRLPGVTVDV
AGAQARALVP CRVGDLPREV ARLQISGSDL PADDPGPPPD DRPVLLLNPR VAMSAGKAAA
QVGHATMLLA ALLDTPDLTV WAMRDYRCAV RVADQDFWDE GVAAVSDPQR AWGEHGLVAV
RDAGFTEVEP GTVTVLARWS RS