Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_29270 |
Symbol | |
ID | 8388251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3168650 |
End bp | 3170704 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644976958 |
Product | DNA helicase, Rad3 |
Protein accession | YP_003134732 |
Protein GI | 257056900 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.318454 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGATG TCCCTTCGGA ACTGCCCAGT GTCCGCGAAC TCCTCTCCCA CGCCGTCGAA GCGGTGGGCG GTACCGAACG TGAAGGCCAG CTACGCATGG CCGACGCCGT GGACCACGCC ATCCGCACGG GCGAACACCT CGCCGTGCAG GCGGGTACGG GTACGGGGAA GTCGCTCGCC TACCTGGTTC CGGCGATCCG TCATGCCGTG GCCTGCGACA CCACCGTGGT GGTCTCGACG GCGACGATCG CACTACAGCG CCAGCTGGTC GACCGTGACC TCCCCCGGCT GGCCAAGGCG CTGAAGAAAC CACTCGGCGT GGAACCGACG TTCGCGATCC TCAAAGGCAG ACGCAACTAC CTGTGCCTGT ATCGCGTGCA CAACGGGGTC GAGGACGACC CCGAGGACAC CGCCCTGTTC GATCCGTTCG CCGTCTCCCG TCTGGGCCGC GAGGTCAAGC GACTCCACCA GTGGTCGTCC GACACCGAAA CGGGTGATCG CGACGAGCTG GTCCCCGGTG TCTCCGAACA GGCGTGGCGG CAGGTGTCGG TGACCGCGAA GGAGTGTCTC GGCGCGACTC GCTGTCCCGT CGGTGACGAC TGCTTCGCCG AACTCGCCCG CGCGGAGGCG AGCAGAGCCA ACATCGTGGT CACCAACCAC GCGCTCCTGG CCATCGACGC GCTGCAGGAC TACCAGGTGC TGCCCGAACA CGACGTCACG ATCATCGACG AGGCCCACGA ACTGGTGGAC CGCGTGACGT CGACGGCCAC GGCCGACCTG TCACCCGCCA TGGTGTCGAC GGCGGCACGC CGGTGCGGCA GGCTCGTCGA CGCCGACATC GCCGACCGGC TGCTGGAAAC CGGTGAGGGC CTGTCGCTGA TGTTGGAGGA CGTGCCGGCG GGTCGACTCG ATGTCCTGCC GGACGCTCTG GGTGGCGCGC TCGCGGCCGT GCGCGACGCG GCGCACGCCT GTATCACCGC GCTCGGCTCC GACCGCAGGG AGGACCCCGA GGAGGCCGCC AAGCGTAAAC TCGCCCGCTC CGCGCTCGAC GACGTGCACG ACACCGCCGT CCGGTTGTTG GAGGCGTTCG AGGACGAGCT CTCCGAACGC CGTGACGTGG TGTGGTGTTC GGGTGGCCGG CACACGGCGT CCCCGAGGCC GCCCGCCCTG CACATCGCGC CGCTGAGTGT CGGGGGTCTG CTGCGTGAAC GCGTCTTCGG CACGAGCACG ACGGTGCTCA CCTCGGCGAC ACTCGCGCTC GGCGGCACGT TCGACACACT GGCCCGGCAG TGGGGGCTGC CGCCGGTTTC ACAACCCACC GAACAGGCAC AGGGCGCCGC CACGGAGAAA CCACCACCGT CGGACGTCGA CCCCGGGCCA CGCTGGCGCG GATTGGACGT CGGATCGCCG TTCGACTACC GCCGCAACGG CATCCTCTAC ATCGCGGGGC ATCTGCCCCG ACCGGGCCGC GACGGACTCA GCCAGGCCGC CTTGGACGAG ATCGCGGAGC TGATCGACGC GGCGGGCGGT CGCACCCTCG GATTGTTCTC GTCCATGCGG GCCGCCAAGC AGGCCACCGA GGAGCTGCGC GACCGGGTCG CACATCCGAT CCTGTGCCAG GGGGAGGACT CCACCTCGCT GCTGGTCAAC AAGTTCGCCG AAGACCCTCG AACGTGTCTG TTCGGCACTT TGTCGCTGTG GCAGGGTGTG GACGTCCCGG GGCCCTCGCT GTCGCTCGTC ATCGTGGACC GGCTGCCGTT CCCCCGACCC GATGATCCGG TGGCCTCGGC ACGACAGCGC GCGGTGGAGG CACGCGGCGG CAACGGCTTC CTCACCGTCG CCGCCACCCA CGCCGCACTG CTGTTGGCCC AGGGCGTGGG CAGACTGCAT CGCGCCAGCA GCGACAAGGG CGTGGTGGCG GTGCTGGATT CCAGGCTTGC CACGGCCCGG TACGGCGGAT TCATCCGGGC TTCACTGCCC CCGTTGTGGC CGACGCAACG GGCCGACGTC GTCCGCGACG CACTGCGCAG ACTCGACGCC GCGGCCCCGG CCTGA
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Protein sequence | MTDVPSELPS VRELLSHAVE AVGGTEREGQ LRMADAVDHA IRTGEHLAVQ AGTGTGKSLA YLVPAIRHAV ACDTTVVVST ATIALQRQLV DRDLPRLAKA LKKPLGVEPT FAILKGRRNY LCLYRVHNGV EDDPEDTALF DPFAVSRLGR EVKRLHQWSS DTETGDRDEL VPGVSEQAWR QVSVTAKECL GATRCPVGDD CFAELARAEA SRANIVVTNH ALLAIDALQD YQVLPEHDVT IIDEAHELVD RVTSTATADL SPAMVSTAAR RCGRLVDADI ADRLLETGEG LSLMLEDVPA GRLDVLPDAL GGALAAVRDA AHACITALGS DRREDPEEAA KRKLARSALD DVHDTAVRLL EAFEDELSER RDVVWCSGGR HTASPRPPAL HIAPLSVGGL LRERVFGTST TVLTSATLAL GGTFDTLARQ WGLPPVSQPT EQAQGAATEK PPPSDVDPGP RWRGLDVGSP FDYRRNGILY IAGHLPRPGR DGLSQAALDE IAELIDAAGG RTLGLFSSMR AAKQATEELR DRVAHPILCQ GEDSTSLLVN KFAEDPRTCL FGTLSLWQGV DVPGPSLSLV IVDRLPFPRP DDPVASARQR AVEARGGNGF LTVAATHAAL LLAQGVGRLH RASSDKGVVA VLDSRLATAR YGGFIRASLP PLWPTQRADV VRDALRRLDA AAPA
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