Gene Svir_29140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_29140 
Symbol 
ID8388238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3159418 
End bp3160215 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content69% 
IMG OID644976945 
Productglutamate racemase 
Protein accessionYP_003134719 
Protein GI257056887 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0796] Glutamate racemase 
TIGRFAM ID[TIGR00067] glutamate racemase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.818975 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACGG CCAGTTCGAA CGCTGCTCCG ATCGGGATCT TCGACTCCGG CGTCGGTGGG 
TTGACGGTCG CGCGCGCCGT GGCCGATCAA CTCCCCGCCG AACGCCTCCG TTACGTGGGG
GACACCCTGC ACGCGCCTTA CGGCCCGTTG CCCATCGCCC GCGTGCGGGA ACTGGCGTTG
CGGGCCCTCG ACGGTCTCGT CGCCGACGGG GTGAAGGCCC TCGTCATCGC CTGTAACACC
GCATCGGCGG CCTGCCTGCG CGACGCCAGG GAACGCTACG ACATCCCGGT GTTCGAGGTC
GTACTCCCGG CGGCGCGGCG AGCCGTGGCG ACGACCCGTA ACGGTCACGT CGGACTCATC
GGAACCGAGG GCACGGTGCG GTCCCGCGCC TACGACGACG CCTTGGCCGC CACCGGGGTC
CGGCTCAGCA GCGTGGCGTG TCCCCGGTTC GTCGAGTTCG TCGAGCGGGG TGTCACCTCC
GGACGACAGA TCCTCGGGCT GGCCCAGGGC TACCTCGAAC CGCTGACCCG TGCGGACGTC
GACACGCTGA TCCTCGGCTG TACGCACTAT CCGTTGCTGA CAGGTGTCCT GCAGACCGTC
ATGGGGCCGG ACGTGACGTT GGTGTCCAGT GCTGAGGAGA CGGCCAAGGA CGTCGTTCGT
GTCCTCACCG AGCTGGATCT GTTGGCCGAC CGTGACGAGC CGCCGGAGCA CGAGTTCATC
GCCACCGGGC CCGCGGAGCC GTTCACCAAG TTGGCGCGTC GGTTCATGGG GCTCGGCACA
GTGCTCGCCG CCACGTGA
 
Protein sequence
MTTASSNAAP IGIFDSGVGG LTVARAVADQ LPAERLRYVG DTLHAPYGPL PIARVRELAL 
RALDGLVADG VKALVIACNT ASAACLRDAR ERYDIPVFEV VLPAARRAVA TTRNGHVGLI
GTEGTVRSRA YDDALAATGV RLSSVACPRF VEFVERGVTS GRQILGLAQG YLEPLTRADV
DTLILGCTHY PLLTGVLQTV MGPDVTLVSS AEETAKDVVR VLTELDLLAD RDEPPEHEFI
ATGPAEPFTK LARRFMGLGT VLAAT