| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28880 |
|---|
| Symbol | |
|---|
| ID | 8388212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3136693 |
|---|
| End bp | 3137922 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976919 |
|---|
| Product | diguanylate cyclase (GGDEF) domain-containing protein |
|---|
| Protein accession | YP_003134694 |
|---|
| Protein GI | 257056862 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.46801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTGGACCA GGCCGAGGCG GTTCATCGTC TTCCTGATCA CCATGGAAGT GTTGTCGGTG
GGCGGGTTCG CGGCGGCGTT CGCCCACTCG CCTCAGCCCA CCGGCTCGGA CTGGCTCGAG
TTCACCATCC TCGCGGCCGG CGCGACAGTA CACATACAAT TGACCCGCCG CCAAGAAGAA
CGGCGTCGGA ACCGTACGAA GACCGTCCTC ATCGACCTCA CCGCCGTATG GGTTTTCCCG
GCGACGTTGG TGCTTCCCGC CACGGTCGCC GTGTTGTTGG TCGTCGTCAT CCGGATCCAG
CGTTGGTTCG TCGCGCGGAG ACCCGCACAC AATTTCATTT ATTCGTCCCT TGCGCACGGT
CTTGCGGCCG CATTGGCCAA TCTCTGCTAC ATGGCGATGG GGCCCCGCGA CTGGACCACG
TTGACCGCGG CTGAGTCACT GCGGGAATTC GGGCTCATCC TGGCCACGGC CCTGGTGTAC
GAAGGAGTGC AGGTCCTCTA CGTCGGCGGG ATCCTCGCTC TCGGCTCTCC CTCCCCGACC
GTCCGAACGG TCCTGGGCAG CAAGGCCGAC AACCTGCTGG AGGCCATCAC CACCGGACTC
GGAGCCGTGA CCGCGGTACT GGTGGTCACC ATGCCCCCCG CCGTGGCGAT CATGGCGGTG
GTGACCGTGG TGTTCAACCG ACTCGCCGAA CTCGACCAGC TGCAGGACGC GGTCGTCACC
GACCCCAAGA CAGGTCTGCT CAACATGCGC GGCTGGACGG AGTCGGCCGA GCGCGCCCTC
AATCGTGTCC GGCGCTCGGG GAGCACACTC GCCGTGCTCA TGGTGGATCT CGACCACTTC
AAACAAATCA ACGACACGTT CGGACATCCT GCGGGGGACG ACGCGCTCGC CGCGGTGGCG
AATGCGCTGT CCAGCGTCAC CCGGCCCGCC GACCTCGTCG GTCGGTTCGG CGGCGAGGAG
TTCCTGCTGC TGCTTCCCAA CGCCGATGCC GCGGCCGCCG AACTCGCGGC AGAACGGGTC
CGGACCACCA TCGCCGCGTT GCGAATCCCC ACCACCGACA AACGAGGTGC CCAGGTCACC
ATCAGTGGTC GCACGGCGTC CATCGGTATA GCGGTGTTCC CTCGACACGC CGACGACCTC
GACGGCCTGC TCCAGGCCGC GGACACGGCG GTGTACGACG CGAAGGAAGC CGGACGTAAC
CGCATCAGCT TCGCACCCGT ACCGCATTGA
|
|---|
| Protein sequence | MWTRPRRFIV FLITMEVLSV GGFAAAFAHS PQPTGSDWLE FTILAAGATV HIQLTRRQEE
RRRNRTKTVL IDLTAVWVFP ATLVLPATVA VLLVVVIRIQ RWFVARRPAH NFIYSSLAHG
LAAALANLCY MAMGPRDWTT LTAAESLREF GLILATALVY EGVQVLYVGG ILALGSPSPT
VRTVLGSKAD NLLEAITTGL GAVTAVLVVT MPPAVAIMAV VTVVFNRLAE LDQLQDAVVT
DPKTGLLNMR GWTESAERAL NRVRRSGSTL AVLMVDLDHF KQINDTFGHP AGDDALAAVA
NALSSVTRPA DLVGRFGGEE FLLLLPNADA AAAELAAERV RTTIAALRIP TTDKRGAQVT
ISGRTASIGI AVFPRHADDL DGLLQAADTA VYDAKEAGRN RISFAPVPH
|
|---|
| |