| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28740 |
|---|
| Symbol | |
|---|
| ID | 8388198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3119717 |
|---|
| End bp | 3121135 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976905 |
|---|
| Product | gluconate transporter |
|---|
| Protein accession | YP_003134681 |
|---|
| Protein GI | 257056849 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2610] H+/gluconate symporter and related permeases |
|---|
| TIGRFAM ID | [TIGR00791] gluconate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.152829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.105113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAG TTGTTCTCGC GGCGCAAGAC GAGATCGTGC TGGCCGACAG ACCGGCCGGC
CTGCTTCTGG CGATCACCGG CGTCGCGATC GCGGTTCTGC TCTTCCTCAT CATCAAGGTG
AGGCTTCACG CGTTCTTCTC ACTTCTCATC GTCAGCCTGC TGACGTCTCT TGCGGCCGGT
GTGGGCATCG GTGACGTCGT CGACGTCGTC ATCGACGGTT TCAGCTCCAC GGTGGGCACC
GTGGCCCTGC TCGTCGGCTT CGGTGCCGTG CTGGGTCGCT TGGTCGAGGT CACCGGAGGC
GCACAGGTCC TCGCCGATCG CATGCTGGAC AAGTTCGGAA CGCGCCGGGC ACCGCTCGCC
CTCGCGGTGG CGTCACTGCT CTACGCGTTC CCGATCTTCC TCGACGCCGG CTTCATCGTG
ATGCTGCCCA TCATCTACAC GGTGGCACGG CGGCTGGGCG GGTCGTTCAT GCTCTACGTC
CTGCCCTCGA TCGGCGCCTT CCTCATGATG CACGCGCTGA CGCCACCGCA CCCCGGTCCC
ACCGCCGCGG CGACGGTCAT GGGGGCGGAC GTCGGCCTCG TCGTCATCGT GTCGTTGCTC
GTCGGGCTGC CCACCTGGTA CCTGGCCGGC TACCGGCTCG GGTTGCTGCT GGCCAAGCGG
TACCCCGACT GGCCGGTTCC GAGCCTGCTC GGTGAGCCCG AGGAACGGGA CGAGTCCGAG
CGTCCGGGCT TTTGGACCAC CGTCTTCTGC CTGCTGCTCC CGCTCGTCCT CATCTTCTTC
AACACGATCT TCTCCACGCT GGAGCAGTCG GGCGCGGTGT CGGCGGAGAA CTTCTTCTAC
CAGCTGTCCC GCCTGATCGG GACCACGTCG GTGGCCCTGC TCATCTCGGC CATCGTCGCC
ATGTGGCTGC TCTACATCCG GCCCCGGAAG GACCGGAAGG TCGGCAACCT GCTCGAGGAT
CTCGTCGACA ACGCCCTCGC CCCCGTCTGC TCGATCATCC TGATCACCGG TGCCGGTGGG
GCCTTCGGCC ACGTCCTGAC CGTGTCCGGC ATCGGTCAGA CCATCGCCGA CGGCCTCGAC
GCAGCGGGCA TGCCGGTGAT CCTCGCCGGC TTCCTCGTCG CCATCGCGTT CCGGGTGGCC
CAGGGGTCGG CGACCGTGGC GGCCACGACC GCGGGTTCGA TCATGGCCCC CGCCGTCGCC
GGGATGGACC TCAACCCCAT CGCGCTCGCG GCGATCGTCG TGGCGATCAC CGCCGGGTCG
ATCACCTTCT CCCACGTCAA CGACTCCGGG TTCTGGCTCA TCGGTCGGTT CTGTGGCTTC
GACACAGCGA CCACCTTCAA GACCTGGACG GTGATCGGCA CCGCGGTCGG CTTCATGGCG
TTCGGCCTAA GCTGGGTCGT CTTCGCCATC GCCTCGTAG
|
|---|
| Protein sequence | MNEVVLAAQD EIVLADRPAG LLLAITGVAI AVLLFLIIKV RLHAFFSLLI VSLLTSLAAG
VGIGDVVDVV IDGFSSTVGT VALLVGFGAV LGRLVEVTGG AQVLADRMLD KFGTRRAPLA
LAVASLLYAF PIFLDAGFIV MLPIIYTVAR RLGGSFMLYV LPSIGAFLMM HALTPPHPGP
TAAATVMGAD VGLVVIVSLL VGLPTWYLAG YRLGLLLAKR YPDWPVPSLL GEPEERDESE
RPGFWTTVFC LLLPLVLIFF NTIFSTLEQS GAVSAENFFY QLSRLIGTTS VALLISAIVA
MWLLYIRPRK DRKVGNLLED LVDNALAPVC SIILITGAGG AFGHVLTVSG IGQTIADGLD
AAGMPVILAG FLVAIAFRVA QGSATVAATT AGSIMAPAVA GMDLNPIALA AIVVAITAGS
ITFSHVNDSG FWLIGRFCGF DTATTFKTWT VIGTAVGFMA FGLSWVVFAI AS
|
|---|
| |