Gene Svir_28580 details

Gene Information

• Locus tag: Svir_28580
• ID: 8388182
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Saccharomonospora viridis DSM 43017
• Kingdom: Bacteria
• Replicon accession: NC_013159
• Strand: +
• Start bp: 3103369
• End bp: 3103818
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644976889
• Product: universal stress protein UspA-like protein
• Protein accession: YP_003134666
• Protein GI: 257056834
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0589] Universal stress protein UspA and related nucleotide-binding proteins

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.243649
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCGCCT ACAACACCAT CGTCGTCGGC ACCGATGGTT CGGACTCGTC ACTGGCCGCC 
GTGGAACGCG CAGCGAGGGT CGCGGCCGAC TCCGCCGCCA CCCTCGTCAT CGCCTGCGCC 
TACTACCCCG CGGGCAAGGA CAAGATCGAC AAAGCTCAGG ACGTGCTCGG TGCGGAGGCG 
TATCAGGTGG TGGGGTCCGC CCCTGCCGAG GAGACGCTGC GCACGGCCCG GGAGCGGGCT 
CTGAAAGCGG GCGCCACCTC GATCGAATGC ACCGCCGTCG TCGGTGAGCC GGTGAGTTCG 
CTGCGCAAGG TCGTCAAAGA GCATGCGGCC GATCTGCTCG TGGTCGGTAA CCGTGGGCTC 
AACACGCTCG CGGGCCGCAT CCTGGGTTCA GTGCCGTCGG AGGCGGCCCG TAAGACGGGT 
GTGGACGTGT TGATCGTCCA CACCACCTGA 

 

Protein sequence

MAAYNTIVVG TDGSDSSLAA VERAARVAAD SAATLVIACA YYPAGKDKID KAQDVLGAEA 
YQVVGSAPAE ETLRTARERA LKAGATSIEC TAVVGEPVSS LRKVVKEHAA DLLVVGNRGL 
NTLAGRILGS VPSEAARKTG VDVLIVHTT