Gene Svir_28340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_28340 
Symbol 
ID8388158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3075224 
End bp3075790 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content68% 
IMG OID644976865 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003134642 
Protein GI257056810 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0595085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGTCG AGGAAGTCAC CACCCGCGTG CTGGACGCGG CCGAGGAGCA GTTCTACGAA 
CGCGGCATCC AGGCCGTGGG CATGGACGCG ATCCGCGCCC GTTCCGGGGT GTCCCTGAAA
CGGCTGTACC AGTGCTTTCC ATCCAAAAAC CACATCGTGG CCGCCTACCT ACGACGTCGT
GACACCCGCT GGCGGACCGA ACTCGCCGAG TACGTGCGCA CACACGGCCA CACCCCCAGG
CGCGCGGTAC TGGCGGTGTT CGACTGGCTG TCCGAATGGT TCCACCGCCC GGAGTTCCGA
GGGTGCGCGT TCGTCAACTC GTTCGGCGAA CTCGGTGGGG TGTCCCCGGC CGTGGCGAAG
GCCGCACGGG AACACAAGGA AGCCGTCGCC GCCTATCTAC GTCGGCTCGT GGAACCACTT
CGAGTGTCCG ATCCGGACGG ACTCACCGCC CAACTCACCG TACTCCTGGA AGGAGCCACG
GTGGTGGCGG CGGTGACGGG CGACCTCGAG GCGGCCCGCG CAAGCCGCGC TTGCGCCGAG
ACAGCGCTCG ATGCGGCGCT CGGCTGA
 
Protein sequence
MDVEEVTTRV LDAAEEQFYE RGIQAVGMDA IRARSGVSLK RLYQCFPSKN HIVAAYLRRR 
DTRWRTELAE YVRTHGHTPR RAVLAVFDWL SEWFHRPEFR GCAFVNSFGE LGGVSPAVAK
AAREHKEAVA AYLRRLVEPL RVSDPDGLTA QLTVLLEGAT VVAAVTGDLE AARASRACAE
TALDAALG