Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_28340 |
Symbol | |
ID | 8388158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3075224 |
End bp | 3075790 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644976865 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003134642 |
Protein GI | 257056810 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.0595085 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTCG AGGAAGTCAC CACCCGCGTG CTGGACGCGG CCGAGGAGCA GTTCTACGAA CGCGGCATCC AGGCCGTGGG CATGGACGCG ATCCGCGCCC GTTCCGGGGT GTCCCTGAAA CGGCTGTACC AGTGCTTTCC ATCCAAAAAC CACATCGTGG CCGCCTACCT ACGACGTCGT GACACCCGCT GGCGGACCGA ACTCGCCGAG TACGTGCGCA CACACGGCCA CACCCCCAGG CGCGCGGTAC TGGCGGTGTT CGACTGGCTG TCCGAATGGT TCCACCGCCC GGAGTTCCGA GGGTGCGCGT TCGTCAACTC GTTCGGCGAA CTCGGTGGGG TGTCCCCGGC CGTGGCGAAG GCCGCACGGG AACACAAGGA AGCCGTCGCC GCCTATCTAC GTCGGCTCGT GGAACCACTT CGAGTGTCCG ATCCGGACGG ACTCACCGCC CAACTCACCG TACTCCTGGA AGGAGCCACG GTGGTGGCGG CGGTGACGGG CGACCTCGAG GCGGCCCGCG CAAGCCGCGC TTGCGCCGAG ACAGCGCTCG ATGCGGCGCT CGGCTGA
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Protein sequence | MDVEEVTTRV LDAAEEQFYE RGIQAVGMDA IRARSGVSLK RLYQCFPSKN HIVAAYLRRR DTRWRTELAE YVRTHGHTPR RAVLAVFDWL SEWFHRPEFR GCAFVNSFGE LGGVSPAVAK AAREHKEAVA AYLRRLVEPL RVSDPDGLTA QLTVLLEGAT VVAAVTGDLE AARASRACAE TALDAALG
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