| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28290 |
|---|
| Symbol | |
|---|
| ID | 8388153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3069177 |
|---|
| End bp | 3070694 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976860 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003134637 |
|---|
| Protein GI | 257056805 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1543] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.964818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAA CCGAAGGCAC CTTCTGCCTG GTACTGCACA GCCACCTACC GTGGCTGCCC
CACCATGGAA ACTGGCCCGT CGGCGAGGAA TGGCTCTACC AGGCGTGGGC GCACTCCTAC
GTACCCCTGG TGGACCTGCT GCACCGGTTC GCCGACGAAG GACGTCGCGA CGTCCTCACC
CTGGGCGTCA CCCCGGTGCT GGCGGCACAA CTCGACGACC CGTACGCACT GCGGTCGTTC
TCCGAATGGC TCGGCCACTG GACCCTGCGG GCACAGCACG CGGCCTCCCT GTGGCGTGGA
CACGACCTGC TCTCCGACCT GGCCTCAGCC GAGTACCGAG CCGCACACCG TGTACTCGCC
GAGGCGGAAT CCCGATGGCG ACACGGATTC TCCCCGCTGC TTCGGTCCTT GGTGGACTCA
CAGGTGATCG AACTGCTCGG TGGTCCGGCC ACTCACCCGT TCCAGCCACT ACTCGACCAG
CGGGTGCGGG CGTTCGCGCT GCGCACCGGG CTGGCAGACA CGACGTTGCG GATCGGACAC
CGCCCCGACG GCATCTGGGC CCCCGAATGC GGCTACGCAC CGGGCATGGA GGACGACTAC
GCCGCGGCCG GGGTGCACCG ATTCCTCGTC GACGGTCCGT CCTTGCGTGG TGACACGGCC
GCTGCCCGCA CCGTGGGCTC GACCGACGTC GTGTGCTTCG GCCGCGATCT GGAAGTGACC
TACCGGGTGT GGTCCCCCAA GGCCGGCTAC CCGGGCCACA GTGCCTATCG CGACTTCCAC
ACCTGGGCCC ACGAAGTGGG CATCAAGCCC TCGCGCGTCA CCGGTAAGCA CATCGCCCCC
GAGGACAAGG CCCCGTACGA TCCGGCGCTC GCGGCCGACG CACTACGGCT GCACGTGAAG
GATTTCGTCG AAACGGTGGT GCAGCGGCTA CGTCAGCTAC GGGAACGACA CGGTCGCCCC
TCCCTGGTGG TGGCCGCCTA CGACACCGAA CTCTTCGGCC ACTGGTGGTA CGAAGGCCCA
CAGTGGTTGG AGGCCGTGCT GCGGGCGCTG CCCGAGGCGG GCGTGCGGGT GACGACGTTG
CGGGGCGCGT TGGAAGCCGG GCATCTCGGC GGTCCGGTGG AACTGCCCGC CTCCTCGTGG
GGTTCGGGCA AGGACTGGCG GGTGTGGGAC GGCGAACAGG TCGCCGACAT GGTGGAGGCC
AACGCCGCGC TCCAGCGCCG ACTGCTGGCG TTGCCCGTGA ACGACGCGGT CCGTGACCCC
GTGGCCGACC AGGCCGTCAC CGAGGCGCTG CTGGCCCTGT CGAGCGACTG GGCGTTCATG
GTGACGAAGG ACTCGGCCGC CGACTACGCC CGCAGACGGG CACGCGAGCA CACCGAACGT
TTCGACCGAC TCGCCGAGGC GCTGCGCGCC GGGCACCCCG ACGCACGCAC CCTCGCCGAG
CGCTACCGCG CCGCCTCCCT GCCCTTCGGG CATCTGGACG CGCGCGAGCT GTTCAGGACC
GCGACCCCGC GGCGATGA
|
|---|
| Protein sequence | MTETEGTFCL VLHSHLPWLP HHGNWPVGEE WLYQAWAHSY VPLVDLLHRF ADEGRRDVLT
LGVTPVLAAQ LDDPYALRSF SEWLGHWTLR AQHAASLWRG HDLLSDLASA EYRAAHRVLA
EAESRWRHGF SPLLRSLVDS QVIELLGGPA THPFQPLLDQ RVRAFALRTG LADTTLRIGH
RPDGIWAPEC GYAPGMEDDY AAAGVHRFLV DGPSLRGDTA AARTVGSTDV VCFGRDLEVT
YRVWSPKAGY PGHSAYRDFH TWAHEVGIKP SRVTGKHIAP EDKAPYDPAL AADALRLHVK
DFVETVVQRL RQLRERHGRP SLVVAAYDTE LFGHWWYEGP QWLEAVLRAL PEAGVRVTTL
RGALEAGHLG GPVELPASSW GSGKDWRVWD GEQVADMVEA NAALQRRLLA LPVNDAVRDP
VADQAVTEAL LALSSDWAFM VTKDSAADYA RRRAREHTER FDRLAEALRA GHPDARTLAE
RYRAASLPFG HLDARELFRT ATPRR
|
|---|
| |