| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28030 |
|---|
| Symbol | |
|---|
| ID | 8388127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3037420 |
|---|
| End bp | 3038925 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976834 |
|---|
| Product | glutamate synthase (NADH) small subunit |
|---|
| Protein accession | YP_003134611 |
|---|
| Protein GI | 257056779 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.328015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGATC CCAAGGGTTT TCTGCGGTAC GAGCGGGTCG ATCCGCCCAA GCGTCCTCGC
AAGGAGCGAG TCGGGGACTG GCGGGAGGTC TATGTCGAGC TCGCCCCTGA GGAACGCGAC
CGTCAGGTGC GCACCCAGGC GACGCGCTGC ATGGACTGCG GTATCCCGTT CTGTCACTCG
GGCAGCGCGG GGTGTCCGCT GGGCAACCTG ATCCCGGAGT GGAACGACCT CGTGCGGCAG
GGTGACTGGG GACGCGCGGT CGACCGCCTG CACGCCACGA ACAACTTCCC CGAGTTCACG
GGCAAGTTGT GCCCGGCGCC GTGCGAGGCG GCGTGTGTGC TGTCGATCTC CCCCGACTCG
GGTGGGGCGG TGAGCATCAA GCGCGTCGAG GAGACGATCG CCGAACACGC GTGGGAAGAG
GGGTACCTGC GTGCGGAGCA CGCGGCGGTG CCCACGGGCA AGGCGGTGGC GGTGGTGGGC
TCGGGGCCCG CCGGGTTGGC GGCAGCACAG CAACTCGTCC GCGCCGGTCA CGAGGTGACG
GTGTTCGAGC GGGACGACCG GTTGGGCGGA CTGCTTCGTT ACGGAATCCC CGAGTTCAAG
ATGGAGAAGA AGGTGCTCGA CCGCAGGCTC GCGCAGCTGC GGGAGGAGGG GGTTCGCTTC
GTCACGAGCT GCGAGGTCGG TGTCGATGTC ACCGTGGAGC AGCTGCGGGA GCGCTTCGAC
GCCGTGGTGC TCGCGGTGGG AGCGCTGCGG GGGCGTGACG ACACCACCAC GCCGGGGCGG
GAGCTGAAGG GCATCCACCT GGCGATGGAA CACCTCGTGC CCGCCAATCG CGAGTGCGAG
GGCGACGGTC CCACTCCCGT GAGCGCCGAG GGCAAGCACG TCGTGATCAT CGGGGGCGGT
GACACGGGGG CCGACTGCTA CGGCACGGCG ATTCGCCAGG GCGCGTTGTC GGTGACGCAG
TTGGACCGCT ATCCCCAGCC ACCGTCCACT CGGGACGACT CCCGTTCGCC GTGGCCCACG
TGGCCCTACA TTCTGCGCAC GTATCCCGTT CATGAGGAGG CGGGGCAGCG GCGTTTCGCC
GTGGGTGTGC AGCGGTTCGT CGGGGACGAC GACGGTCACG TGAGGGAGCT CGAACTCCGT
CGGGTGGAGG TGCGCAAGGA CCCCGAGACC GGACACCGCG AGGTCGTCCC GGTCGACGAC
GAGGTCGAGC GCATCCCGGC CGATCTGGTG TTGCTCGCCA TCGGCTTCGA GGGCGTGGAG
CACATGCCGT TGCTGGACGA GTTGGGTCTG TCGTTGAACG GGCGCGGCAC GCTCTCGTGC
GGCGCCGACT GGCAGACGCA GGTGCCGGGT GTGTTCGTGT GCGGTGACGC TCATCGGGGC
GCGTCCCTGG TGGTGTGGGC CATCGCGGAG GGGCGTTCGG CCGCGAGAGC GGTGGACGAA
TACCTGATGG GGGAGTCCGA CCTGCCGGCT CCGGTCCACC CCACGGCGTT GCCGCTGGCC
GTCTGA
|
|---|
| Protein sequence | MADPKGFLRY ERVDPPKRPR KERVGDWREV YVELAPEERD RQVRTQATRC MDCGIPFCHS
GSAGCPLGNL IPEWNDLVRQ GDWGRAVDRL HATNNFPEFT GKLCPAPCEA ACVLSISPDS
GGAVSIKRVE ETIAEHAWEE GYLRAEHAAV PTGKAVAVVG SGPAGLAAAQ QLVRAGHEVT
VFERDDRLGG LLRYGIPEFK MEKKVLDRRL AQLREEGVRF VTSCEVGVDV TVEQLRERFD
AVVLAVGALR GRDDTTTPGR ELKGIHLAME HLVPANRECE GDGPTPVSAE GKHVVIIGGG
DTGADCYGTA IRQGALSVTQ LDRYPQPPST RDDSRSPWPT WPYILRTYPV HEEAGQRRFA
VGVQRFVGDD DGHVRELELR RVEVRKDPET GHREVVPVDD EVERIPADLV LLAIGFEGVE
HMPLLDELGL SLNGRGTLSC GADWQTQVPG VFVCGDAHRG ASLVVWAIAE GRSAARAVDE
YLMGESDLPA PVHPTALPLA V
|
|---|
| |