| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27990 |
|---|
| Symbol | |
|---|
| ID | 8388123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3031352 |
|---|
| End bp | 3033328 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976830 |
|---|
| Product | protein kinase family protein with PASTA domain protein |
|---|
| Protein accession | YP_003134607 |
|---|
| Protein GI | 257056775 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.760055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.210084 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACGCA CCGAACCGAG CCTCGCCGGC GCCCTCCTCG ACCGGCGGTA CCGCGTCGAG
GATCTGATCG CCCGAGGTGG AATGTCATCG GTGTACCGCG GAGTCGACAC CAGGTTGGAC
CGGCCGGTCG CCGTGAAGGT CATGGACTCG CGGTTCGCGG GTGACCGGTC GTTCGTCGAT
CGGTTCGAAC GGGAGGCCCG GGCGGCTGCT CGGCTGCATC ATCCGCACGT CGTCGCGGTG
CACGACCAGG GTTTCGACAC CTCGGCCGAC CCGGAGAACC CCAGGGCCTT CCTGGTGATG
GAACTCGTGA ACGGCGGGAC CCTGCGCGAC CTGATCAACG AGCGGGGCCG ACTCGACGTG
CCGTTGGCCC TCACCGTCGC CGAGCAGGTC TCCTCGGCGC TGGCCGCCGC CCATGCCGCC
GGACTCGTAC ATCGGGACAT CAAACCAGAG AACGTGCTCA TCGGCAGGGG CGGCGACACC
GGTGGTGTCG TCAAGGTCGC CGATTTCGGT CTGGTCCGCG CGGCGGCGAG CGCGGGGACC
ACCAGCGCGA ACATCATCCT CGGCACGGTC GCGTATCTCT CTCCCGAACA GGTGGCGACG
GGGACGACGA CCGCACGGTC GGACATCTAC TCGACGGGCA TCCTGCTGTA CGAAATGCTC
ACCGGCCGGG TGCCCTACAG CGGTGACACG GCGCTGTCGG TGGCCTACCG CCATGTCAAC
GACGACGTGC CCGCGCCGAG CACGGTGGTC CCGGGGATAC CCGCGGCGCT CGACGACCTC
GTGCTGCGCG CCACCCGCCG CGACGCCGAG GCACGTCCGG CAGACGCGGC GAAGTTCCTG
GCGGAACTTC GCCGGGTGAA GGCCGAACTC GGCGTGCGCA CCGCCACGAT CCCGGTGGCC
ACGCCACCCG ACGCTCCCCG AATCTCACGG AGCGTCCCCG CCGAGGACGA CTCGGAACTG
ACCGTGCCCG CCATACCCGC GATCACGGAG CACTCCGGGC CCGGTCCACG CGGCACGCAG
GCCCTACCGC GCGCCATGGT CGAAACCTCG GGGCACCTCG GCCCTCCGCA GGCCGAGCCG
CCCACCGCTT CGCCCCGACG CCGTCCCCCA CTCGCGGTCC TGGCGCTGGT GGTGCTGGTC
CTGCTGGGCG GGGTCGGCGC CGGTGTGTGG TGGTTCTCCG CCGGTCGCTA CGTGGACGTC
CCCTCGGTCG CCGGGCTGAG CCGGGAGGAG GCGGAGACGG CGTTACGTCA AGCGGAGCTG
ACCCCCGTGT TCACCGAGGA GCGGCACAAC ACCGCCCCGG CGGGAACGGT GATCCGCAGC
GAGCCGGACA GCGGCTCACG GGCGTTGCAG GGCGACGAGG TGACCGTGGT GCTCTCCTTG
GGCAAGCCGG TGGTGCCCGA TGTCCGCGCG GGCGCGTCCG TCGAGGAGGC CGAGCGCGCC
ATCCGCGCCA TGCAATTGGA ACCACGGGTG GACGCCGAAG CCGACGCCTA CGACGCCGAG
GTGCCCGAGG GTGCCGTGGT CACACTGACA CCGAAACCGG GCACCCAGGC CAACGTCGGT
GACACGGTGA CCATCGTGCG GTCGAAAGGC CCGCCTCCGA CACCCGTTCC CGACGTCAGC
GGCATGTCCC GGGACGAGGC GTTCCAGGCA CTGCGGAACG CGGGATTCGA ACCGTTCGAG
GCGGGGAAGG AATTCTCCCC CAACGTGCAA GCGGGACACG TCGTGCGTAC CGATCCCGAA
CAGGGCAGCA CGCCCGAGCC GGGCAGCCGG GTCGGGGTGT TCGTGTCCAA CGCGGTGGAG
GTGCCGTCCG TTGTGGGACG GCAGACCAAA AAGGCCGTCC GGATACTCCG CGAGGCGGGC
TTCAAGGTGG AGGCCGAGAA GTCACGTGGC CCCGTCAGCT TCGTGATCGA GCAGAGCCCC
GACGGCGGTA CCCTCGCCGA GCCCGGCTCG ACGGTCACCC TGTCGGTGAT CCCCTGA
|
|---|
| Protein sequence | MTRTEPSLAG ALLDRRYRVE DLIARGGMSS VYRGVDTRLD RPVAVKVMDS RFAGDRSFVD
RFEREARAAA RLHHPHVVAV HDQGFDTSAD PENPRAFLVM ELVNGGTLRD LINERGRLDV
PLALTVAEQV SSALAAAHAA GLVHRDIKPE NVLIGRGGDT GGVVKVADFG LVRAAASAGT
TSANIILGTV AYLSPEQVAT GTTTARSDIY STGILLYEML TGRVPYSGDT ALSVAYRHVN
DDVPAPSTVV PGIPAALDDL VLRATRRDAE ARPADAAKFL AELRRVKAEL GVRTATIPVA
TPPDAPRISR SVPAEDDSEL TVPAIPAITE HSGPGPRGTQ ALPRAMVETS GHLGPPQAEP
PTASPRRRPP LAVLALVVLV LLGGVGAGVW WFSAGRYVDV PSVAGLSREE AETALRQAEL
TPVFTEERHN TAPAGTVIRS EPDSGSRALQ GDEVTVVLSL GKPVVPDVRA GASVEEAERA
IRAMQLEPRV DAEADAYDAE VPEGAVVTLT PKPGTQANVG DTVTIVRSKG PPPTPVPDVS
GMSRDEAFQA LRNAGFEPFE AGKEFSPNVQ AGHVVRTDPE QGSTPEPGSR VGVFVSNAVE
VPSVVGRQTK KAVRILREAG FKVEAEKSRG PVSFVIEQSP DGGTLAEPGS TVTLSVIP
|
|---|
| |