| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27850 |
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| Symbol | |
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| ID | 8388109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 3012341 |
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| End bp | 3016990 |
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| Gene Length | 4650 bp |
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| Protein Length | 1549 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644976816 |
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| Product | ATP dependent helicase, Lhr family |
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| Protein accession | YP_003134593 |
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| Protein GI | 257056761 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.081171 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGACA ACGCAAGCGG TGACGTGCTC GAGTTGTTCT CCCCCGCGAC CCGGGAGTGG
TTCACCAGTG CCTTCGCGCG CCCCACGGCC GCCCAGGAGG GGGCGTGGCG GGCCGCACGG
GCCGGGGAGC ATGCGCTGGT GATCGCGCCC ACCGGCTCGG GCAAGACGCT GGCGGCGTTC
CTGTGGGCGC TCGACCGGCT GGCGACCTCT CCTCCGTCCG AAGGAAGGAA GCGGTGTCGG
GTGCTCTACG TGTCCCCGCT CAAGGCGTTG GCGGTGGACG TCCAACGCAA CCTGCGGACG
CCGCTGACGG GGATCGCGCA AGCCGCCCTC CGGTTGGGTG TGCCGGCACC GGACATCACC
GTGGGAACCC GCACGGGGGA CACGACGCCC GCCGAACGCC GCGCGTTCAC ACGAACCCCT
CCGGATGTGC TGGTGACCAC GCCGGAATCG CTGTTCCTGC TGCTGACCTC GGCAGCCCGG
GAAGCGCTGC GCGGAGTCGA GACGGTGATC GTCGACGAGG TGCACGCGGT CGCAGGGAGC
AAACGCGGAG CCCATCTGGC GCTGTCCCTG GAACGGCTCG ACGACCTGCT CGACCGCCCG
GCGCAGCGGA TCGGACTGTC GGCGACCGTG CGTCCGGTGG ACGAGGTGAG CACGTTCCTG
GCCGGCGGCA GACCCGTCCG CATCGTCCAA CCCGCGATCG ACAAGACCGT CGAGGTCCGG
GTGGAGGTTC CGGTCGAGGA CCTGGGGGAG CTCGACGCAC GGTCCCGTCC GGAACCGGCT
GAACCGGCGC CGCTGCCCAC GGAGGCGGAT CCCACAGCGG GCACCGAGGT CACCGGAGGA
ACCACGCCCC GAAGGTCCGT CTGGCCCGCC GTGGAGGAGC GGGTGCTCGA CCTCGTGCGC
GCACACCGGT CGACCATCGT GTTCGTCAAT TCGCGGCGGT TGGCCGAACG GTTGACGGCA
CGGCTCAACG AGTTGGCGGC CGAACAGGCG GGGACGATCG AGGTACCGGG ACGCTTCCCC
GCGGAGGCGA TCGGCCAGTC CGGGTTCGTC GGCGCGCTCC CGGAAACGGC TTCCGTGGTG
GCCCGGGCGC ACCACGGCTC GATGTCACGG GAACAGCGGA CCCGCGTCGA GGAGGAGTTG
AAGTCGGGCA GGCTGCCGTG CGTCGTGGCG ACCTCGTCGC TGGAGCTGGG CATCGACATG
GGAGCCGTGG ACCTCGTGAT CCAGGTGGAG GCCCCACCCA CGGTGGCCTC CGGGCTGCAG
CGGATCGGCC GCGCGGGCCA CCAGGTGGGG GCCGTGTCGA GGGGGGTGGT GTTCCCGAAG
TTCCGGGGCG ATCTCGTGTC GTGCGCCGTG GTGGCCGAGC GGATGGCCGA AGGCGCCATC
GAAGCGGTGC GTTTCCCCCG TAACCCGCTG GACGTGTTGG CCCAGCACAT CGTGGCGATG
GTGGCCGTGG AGCCCCGCAC GGTGGACGAT GTGGCGACGA CCGTGCGCAG GGCCGCTCCG
TTCGCCTCGC TGCCCGACGA CGCGTTGCAC GCCGTACTCG ACATGTTGGC GGGCCGCTAT
CCGAGCGAGG AGTTCGGCGA GCTGCGCGCC CGCATCACCT GGGACCGGAT CACCGGTGTA
CTGCAAGGCC GGCCCGGCGC ACAGCGGCTC GCCGTCACCT CGGGTGGCAC GATCCCCGAC
CGTGGTTTGT TCACCGTGAT GACGCCGGGA GACGGTGAGC GGCCGGGGTC GCGGGTCGGC
GAACTGGACG AGGAGATGGT CTACGAGTCC AGGGTCGGCG ACACCGTGCT GCTGGGCACG
TCGTCGTGGC GGGTCACCGA CATCACCCAC GACCGCGTGG TCGTGGTCCC CGCGCCGGGC
GAGCCCGCGA GGATGCCGTT CTGGCGCGGC GACACCCCGG GCAGGCCGGC GGAACTGGGT
CGCGCAGTCG GAGGTTTCCT CCGCTTCCTG TCCACTGCAG ACAAACAGGA GGCACTTCGC
CGGATGACGG AGGCCGGTCT GGACGAGCGT GCGGGAAGGA ACCTCCTGGC CTATGTGGAC
GAGCAGCGTG CCGCCACCCG ACACGTGCCG AGTGACCGGA CGATCCTGCT CGAACGTTTC
CGGGACGAGC TGGGTGACTG GCGGGTGGTC GTGCACTCCC CCTTCGGCGC GCGGGTGAAC
GCGCCGTGGG CGCTGGCCAT CGCGGCACGG CTGCGAAAGC ACCGGGACGT GGACGCACAC
GTGGTGCACT CGGACGACGG GATCGTCCTG CGTTTGCCGG ACACACTGGA CGACGAGGGA
CGGGAGGTGC TGATCGGCGC CGAGGACGTC CTGTTCGACC CCGACGAGAT CGAGTCCCTG
GTCGCCGCCG AAGTGGGTGG CTCCGCGTTG TTCGCGGCAC GGTTCCGCGA ATGCGCGGCG
CGTTCCCTGC TGTTGCCACG CCGTGACCCG CGGCGGCGCA CCCCGCTGTG GCAGCAGCGG
CAACGGGCGT CGCAACTGCT CGCCGTGGCG GCGAAGTACG AACGGTTCCC GGTGGTCCTG
GAAACCATGC GGGAGTGTTT GCAGGACGTG TACGACGTGG GCGGCCTGCG GGAGTTGATG
GGTGACATCG CGGCTCGATC GGTACGGGTC GTGGAAGTGG AGACACCGTC GGCCTCACCG
TTCGCCCGCA GCCTGCTGTT CGGTTACGTC GGCATGTTCC TGTACGAGGC CGACGCGCCG
CTGGCCGAGC GACGTGCCGC GGCGTTGTCG GTGGATTCGA CCCTGTTGGC CGAGCTGCTC
GGCACCGAGG CCATTCGGGA ACTGCTCGAC GCCGATGTCG TCGCCGGGAT GGAACGCTCG
TTGCAACGGC TCACTCCCGA ACGGCACGCC CGCGGGGTCG AGGAGACGGC CGACCTGTTG
CGTTCCCTCG GCGACCTGAC GCGGCAGGAG GCGGCTGAAC GCGGAGTCCG GCCGGAATGG
CTGGAACGGC TGGTGGCCGA ACGGCGCGCG ATCGTGGTGC GCATCGCCGG CGAGGAACGC
TATCTCGCCA TCGAGGACGC GAGTCGGGTG CGGGACGCGC TCGGGGTGGC GTTACCGGTC
GGGGTGCCCG AGTCATTCAC CGAACCGGTC GCCGATCCCC TGGGGGATCT GCTGCGGCGC
TATGCGCGAA CGCATACCCC GTTCTCGGCG CACGAGGCCG CGACGCGGTT CGGACTCGGC
ACAGCGGTGG TCACCGATGT CCTGGACCGG TTGACGGCCG AAGGCGCGCT GGTGCGAGGA
GAGCTGCGGC CACAGGGTGC GCCGGGTTAT GAGGCGGGGA TGGAGTACTG CGACGCCGCG
GTGCTGAGAA GGCTGCGGAG GGCGTCGCTG GCGAGACTGC GTTCTGAGGT GGAGCCGGTC
GAACATGCGG CGTTCGGTCG GTTCCTGCCC AGCTGGCACG GCCTCGGCGC GCAGCGACGC
CGTGCCGATT CGGCCCCCAC CCCCGACGAC GTGTTGGCGG TGGTGGAGCA GCTCGCGGGG
GCCCCGTTGC CGGCGAGTGC ACTGGAGTCG TTGATCCTGC CCGCTCGGCT GCCGGGCTAT
CACCCGGCGC TGTTGGACGA GTTGACGGTG GCGGGGGAGG TGACGTGGTG CGGCTGTGGC
GCACTGTCGG GTGGTGACGG CTGGGTGGCC CTGGCCCCGG CCGACGTGGC CGACCTGCTG
TTGCCGGACC CCGAGGACAC GTCCACCCAC GGCCCACTCC ACGCGGCGAT AGTGTCGGCT
TTGGACGGTG GCGGGTTGTT CTTCCGTCAG CTCGTCGATC GTGTCGCCAC CATGCTGGAC
GAACCGTGCA CCGACGCCGA CGTGATCACG GCCCTGTGGG AGCTCGTGTG GGCGGGGCTG
GTGTCGAACG ACACGCTGGC ACCTCTCCGC GCCCAGGTCG CCGGGCGGGG TGTCGCGCAC
AGGCCCCGTC GATCCGCACC GCGCGGACGG TATGCGCGGC TACGGGCGGC TCGTCCCACG
ATGCCCGGTC GTACCGGACC ACCGACGGTG GCCGGGCGGT GGGACTTGGC CCCCGCGCGC
GAGACGGACC CGACCCGCCG GGCGCACGCC CGCACCGAGT CGTTCCTGGA ACGGCACGGC
GTGCTCACCC GGGGAGCGCT GGAGACCGAG CGGGTGGACG GCGGTTTCTC CGGCATCTAC
AAGGTGTTGC GCGGGATGGA GGACGCGGGC CAGGTCGTGC GCGGCTACGT CGTCGAGGGG
CTGGGGGCCG CTCAATTCGC GGCGCGAGGC GCGATCGATC GGGTACGAGC GTTCTCGGAG
GCCGGTGGGT GGCGAGCGGA ACACCGGGCC GTGGTCCTGG CCGCCGCCGA CCCGGCTCAA
CCGTACGGTG CCGCGTTACC GTGGCCTGCC GTCGTGGGCA CCACCGCCCA TCGGCCGGCG
CGTAAGGCGG GTGCGTTGAC GGTGCTCGTG GACGGTGTTC CCGCGCTCTA CGCCGAACGC
GGAGGCCGGT CGCTGTTGTC GTTCACCGAC GACGAGCTCA CTTTGCACGT CGCCGCCGAG
GCGCTGGCGA CGGCGGTGCG CGACGGGTGG CTCGGGCAGC TACGGGTGCG ACGCGCCGAC
GGCGAGGAGA TCCTGACCTC GAAGTTGGCG GACGTGCTTC GCGATGTGGG GTTCCGCGTC
ACCCCACAAG GACTGCGACT GCGGGGATGA
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| Protein sequence | MPDNASGDVL ELFSPATREW FTSAFARPTA AQEGAWRAAR AGEHALVIAP TGSGKTLAAF
LWALDRLATS PPSEGRKRCR VLYVSPLKAL AVDVQRNLRT PLTGIAQAAL RLGVPAPDIT
VGTRTGDTTP AERRAFTRTP PDVLVTTPES LFLLLTSAAR EALRGVETVI VDEVHAVAGS
KRGAHLALSL ERLDDLLDRP AQRIGLSATV RPVDEVSTFL AGGRPVRIVQ PAIDKTVEVR
VEVPVEDLGE LDARSRPEPA EPAPLPTEAD PTAGTEVTGG TTPRRSVWPA VEERVLDLVR
AHRSTIVFVN SRRLAERLTA RLNELAAEQA GTIEVPGRFP AEAIGQSGFV GALPETASVV
ARAHHGSMSR EQRTRVEEEL KSGRLPCVVA TSSLELGIDM GAVDLVIQVE APPTVASGLQ
RIGRAGHQVG AVSRGVVFPK FRGDLVSCAV VAERMAEGAI EAVRFPRNPL DVLAQHIVAM
VAVEPRTVDD VATTVRRAAP FASLPDDALH AVLDMLAGRY PSEEFGELRA RITWDRITGV
LQGRPGAQRL AVTSGGTIPD RGLFTVMTPG DGERPGSRVG ELDEEMVYES RVGDTVLLGT
SSWRVTDITH DRVVVVPAPG EPARMPFWRG DTPGRPAELG RAVGGFLRFL STADKQEALR
RMTEAGLDER AGRNLLAYVD EQRAATRHVP SDRTILLERF RDELGDWRVV VHSPFGARVN
APWALAIAAR LRKHRDVDAH VVHSDDGIVL RLPDTLDDEG REVLIGAEDV LFDPDEIESL
VAAEVGGSAL FAARFRECAA RSLLLPRRDP RRRTPLWQQR QRASQLLAVA AKYERFPVVL
ETMRECLQDV YDVGGLRELM GDIAARSVRV VEVETPSASP FARSLLFGYV GMFLYEADAP
LAERRAAALS VDSTLLAELL GTEAIRELLD ADVVAGMERS LQRLTPERHA RGVEETADLL
RSLGDLTRQE AAERGVRPEW LERLVAERRA IVVRIAGEER YLAIEDASRV RDALGVALPV
GVPESFTEPV ADPLGDLLRR YARTHTPFSA HEAATRFGLG TAVVTDVLDR LTAEGALVRG
ELRPQGAPGY EAGMEYCDAA VLRRLRRASL ARLRSEVEPV EHAAFGRFLP SWHGLGAQRR
RADSAPTPDD VLAVVEQLAG APLPASALES LILPARLPGY HPALLDELTV AGEVTWCGCG
ALSGGDGWVA LAPADVADLL LPDPEDTSTH GPLHAAIVSA LDGGGLFFRQ LVDRVATMLD
EPCTDADVIT ALWELVWAGL VSNDTLAPLR AQVAGRGVAH RPRRSAPRGR YARLRAARPT
MPGRTGPPTV AGRWDLAPAR ETDPTRRAHA RTESFLERHG VLTRGALETE RVDGGFSGIY
KVLRGMEDAG QVVRGYVVEG LGAAQFAARG AIDRVRAFSE AGGWRAEHRA VVLAAADPAQ
PYGAALPWPA VVGTTAHRPA RKAGALTVLV DGVPALYAER GGRSLLSFTD DELTLHVAAE
ALATAVRDGW LGQLRVRRAD GEEILTSKLA DVLRDVGFRV TPQGLRLRG
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